Gene annotation
Transcriptome id Sobic.007G171800.1
Synonym Sb07g024400, ATRBP31, RBP31, CP31, ATRBP33
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YN98
Pfam PF00076
Panther DB PTHR24012
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology K11294; NCL, nucleolin
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G24770 : 31-kDa RNA binding protein
RAP-DB (Rice) LOC_Os08g44290.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a005621 , Zm00025a030578 , Zm00025a045914
Brachypodium KQJ99338
Barley -
Wheat TraesCS7A02G278300 , TraesCS7D02G278100 , TraesCS7B02G176100
Populus -


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cDNA sequences
Sobic.007G171800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
2 Sobic.005G110481 - -
3 Sobic.002G251400 expressed protein -
4 Sobic.002G131700 RNA recognition motif containing protein, putative, expressed -
5 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
6 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
7 Sobic.003G324700 expressed protein -
8 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
9 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
10 Sobic.002G013700 PPR2, putative, expressed -
11 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
12 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
13 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
14 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
15 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
16 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
17 Sobic.009G098100 T-complex protein, putative, expressed -
18 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
20 Sobic.003G386300 expressed protein -


Gene co-expression network
sample Sobic007G171800 Sobic007G171800 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic002G251400 Sobic002G251400 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic010G011200--Sobic001G148200 Sobic002G013700 Sobic002G013700 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic009G104700 Sobic009G104700 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic001G040000 Sobic001G040000 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic001G240000 Sobic001G240000 Sobic002G251400--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic002G251400--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic002G251400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic002G251400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic004G179200 Sobic004G179200 Sobic002G131700--Sobic004G179200 Sobic003G330100 Sobic003G330100 Sobic002G131700--Sobic003G330100 Sobic006G111600 Sobic006G111600 Sobic002G131700--Sobic006G111600 Sobic002G131700--Sobic007G171800 Sobic005G002900 Sobic005G002900 Sobic002G131700--Sobic005G002900 Sobic002G131700--Sobic010G035200 Sobic003G221700 Sobic003G221700 Sobic002G131700--Sobic003G221700 Sobic001G469933 Sobic001G469933 Sobic002G131700--Sobic001G469933 Sobic001G083100 Sobic001G083100 Sobic002G131700--Sobic001G083100 Sobic009G042200--Sobic005G110481 Sobic009G042200--Sobic007G171800 Sobic009G042200--Sobic001G148200 Sobic007G155600 Sobic007G155600 Sobic009G042200--Sobic007G155600 Sobic001G391400 Sobic001G391400 Sobic009G042200--Sobic001G391400 Sobic009G042200--Sobic002G251400 Sobic009G042200--Sobic004G335800 Sobic003G444500 Sobic003G444500 Sobic009G042200--Sobic003G444500 Sobic002G297400 Sobic002G297400 Sobic009G042200--Sobic002G297400 Sobic001G148200--Sobic005G110481 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic001G148200--Sobic002G013700 Sobic001G148200--Sobic007G034500 Sobic001G148200--Sobic009G001500 Sobic003G324700--Sobic001G122400 Sobic001G368500 Sobic001G368500 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G324700--Sobic003G386300 Sobic003G432500 Sobic003G432500 Sobic003G324700--Sobic003G432500 Sobic003G324700--Sobic001G527100 Sobic007G034500--Sobic007G171800 Sobic004G044000 Sobic004G044000 Sobic007G034500--Sobic004G044000 Sobic006G280050 Sobic006G280050 Sobic007G034500--Sobic006G280050 Sobic004G191200 Sobic004G191200 Sobic007G034500--Sobic004G191200 Sobic001G357200 Sobic001G357200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic001G191000 Sobic001G191000 Sobic007G034500--Sobic001G191000 Sobic001G027600 Sobic001G027600 Sobic007G034500--Sobic001G027600 Sobic010G035200--Sobic001G469933 Sobic010G035200--Sobic003G324700 Sobic010G035200--Sobic007G171800 Sobic010G035200--Sobic002G131700 Sobic010G035200--Sobic001G083100 Sobic010G035200--Sobic001G122400 Sobic008G039600 Sobic008G039600 Sobic010G035200--Sobic008G039600 Sobic009G131600 Sobic009G131600 Sobic010G035200--Sobic009G131600 Sobic010G035200--Sobic004G164100
Octagon: transcription factors


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