Gene annotation
Transcriptome id Sobic.001G240000.1
Synonym Sb01g021250
Functional annotation ribosomal protein L28 protein, putative, expressed
UniProt C5X0K4
Pfam PF00830
Panther DB PTHR13528 PTHR13528:SF6
NCBI CDD -
KEGG Orthology K02902; RP-L28, MRPL28, large subunit ribosomal protein L28
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT2G33450 : Ribosomal L28 family
RAP-DB (Rice) LOC_Os05g01110.1 : ribosomal protein L28 protein, putative, expressed
MaizeGDB (Corn) Zm00025a017762 , Zm00025a006830
Brachypodium KQK08160
Barley HORVU1Hr1G000040.3 , HORVU1Hr1G000040.2 , HORVU1Hr1G000040.1
Wheat TraesCS1D02G003700 , TraesCS1A02G001800 , TraesCS1B02G000600
Populus -


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cDNA sequences
Sobic.001G240000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
2 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
3 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
4 Sobic.003G386300 expressed protein -
5 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
6 Sobic.002G251400 expressed protein -
7 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
8 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
9 Sobic.002G198000 CRR6, putative, expressed -
10 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
12 Sobic.006G248200 - -
13 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
14 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
15 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
16 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
17 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
18 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
19 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G531200 methylthioribose kinase, putative, expressed -


Gene co-expression network
sample Sobic001G240000 Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic001G240000--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic001G240000--Sobic001G040000 Sobic001G122400 Sobic001G122400 Sobic001G240000--Sobic001G122400 Sobic003G386300 Sobic003G386300 Sobic001G240000--Sobic003G386300 Sobic001G391400 Sobic001G391400 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic002G198000 Sobic002G198000 Sobic001G240000--Sobic002G198000 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic004G164100 Sobic004G164100 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic004G116100 Sobic004G116100 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic001G391400--Sobic001G040000 Sobic001G391400--Sobic001G527100 Sobic001G391400--Sobic001G122400 Sobic001G391400--Sobic004G335800 Sobic001G391400--Sobic004G116100 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic002G251400--Sobic001G040000 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic002G251400--Sobic001G527100 Sobic007G013400 Sobic007G013400 Sobic002G251400--Sobic007G013400 Sobic002G251400--Sobic003G295800 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic003G328200--Sobic001G527100 Sobic003G328200--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G328200--Sobic003G386300 Sobic002G198000--Sobic004G164100 Sobic002G198000--Sobic001G527100 Sobic002G198000--Sobic001G122400 Sobic002G198000--Sobic003G386300 Sobic002G198000--Sobic001G240000 Sobic002G198000--Sobic004G335800 Sobic002G198000--Sobic001G469933 Sobic002G198000--Sobic002G251400 Sobic002G198000--Sobic010G095200
Octagon: transcription factors


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