Gene annotation
Transcriptome id Sobic.004G164100.1
Synonym Sb04g021580
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5XTD9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF453
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16480 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g32780.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a020530
Brachypodium PNT68754
Barley HORVU6Hr1G066600.2 , HORVU6Hr1G066600.3 , HORVU6Hr1G066600.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G198000 CRR6, putative, expressed -
2 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
3 Sobic.003G386300 expressed protein -
4 Sobic.002G251400 expressed protein -
5 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
6 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
7 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
8 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
9 Sobic.004G326500 PAP fibrillin family domain containing protein, expressed -
10 Sobic.003G014100 uncharacterized protein family UPF0016 domain containing protein, expressed -
11 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
12 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
13 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
14 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
15 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
16 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
17 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
18 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
19 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
20 Sobic.009G130800 tat pathway signal sequence family protein, expressed -


Gene co-expression network
sample Sobic004G164100 Sobic004G164100 Sobic002G198000 Sobic002G198000 Sobic004G164100--Sobic002G198000 Sobic001G527100 Sobic001G527100 Sobic004G164100--Sobic001G527100 Sobic003G386300 Sobic003G386300 Sobic004G164100--Sobic003G386300 Sobic002G251400 Sobic002G251400 Sobic004G164100--Sobic002G251400 Sobic001G240000 Sobic001G240000 Sobic004G164100--Sobic001G240000 Sobic001G122400 Sobic001G122400 Sobic004G164100--Sobic001G122400 Sobic010G095200 Sobic010G095200 Sobic004G164100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic004G164100--Sobic004G335800 Sobic004G326500 Sobic004G326500 Sobic004G164100--Sobic004G326500 Sobic002G198000--Sobic004G164100 Sobic002G198000--Sobic001G527100 Sobic002G198000--Sobic001G122400 Sobic002G198000--Sobic003G386300 Sobic002G198000--Sobic001G240000 Sobic002G198000--Sobic004G335800 Sobic001G469933 Sobic001G469933 Sobic002G198000--Sobic001G469933 Sobic002G198000--Sobic002G251400 Sobic002G198000--Sobic010G095200 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G391400 Sobic001G391400 Sobic001G527100--Sobic001G391400 Sobic001G040000 Sobic001G040000 Sobic001G527100--Sobic001G040000 Sobic003G328200 Sobic003G328200 Sobic001G527100--Sobic003G328200 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic002G251400--Sobic001G040000 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic002G251400--Sobic001G527100 Sobic007G013400 Sobic007G013400 Sobic002G251400--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic002G251400--Sobic003G295800 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic010G095200--Sobic003G386300 Sobic010G095200--Sobic001G122400 Sobic010G095200--Sobic001G240000 Sobic007G090537 Sobic007G090537 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic010G095200--Sobic001G527100 Sobic010G095200--Sobic002G251400 Sobic010G095200--Sobic002G198000 Sobic009G130800 Sobic009G130800 Sobic010G095200--Sobic009G130800 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic003G275200 Sobic003G275200 Sobic004G326500--Sobic003G275200 Sobic004G055000 Sobic004G055000 Sobic004G326500--Sobic004G055000 Sobic004G326500--Sobic002G198000 Sobic004G326500--Sobic004G164100 Sobic002G267900 Sobic002G267900 Sobic004G326500--Sobic002G267900 Sobic004G326500--Sobic001G527100 Sobic008G172700 Sobic008G172700 Sobic004G326500--Sobic008G172700 Sobic004G343000 Sobic004G343000 Sobic004G326500--Sobic004G343000 Sobic004G326500--Sobic001G122400
Octagon: transcription factors


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