Gene annotation
Transcriptome id Sobic.001G475600.1
Synonym ABC4, Sb01g044560
Functional annotation prenyltransferase, putative, expressed
UniProt A0A1B6QQ07
Pfam PF01040
Panther DB PTHR13929 PTHR13929:SF3
NCBI CDD -
KEGG Orthology K02548; 1,4-dihydroxy-2-naphthoate polyprenyltransferase
Gene Ontology GO:0016021; integral component of membrane GO:0004659prenyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G60600 : UbiA prenyltransferase family protein
RAP-DB (Rice) LOC_Os03g09060.1 : prenyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a001033
Brachypodium KQK23200 , KQK23198 , KQK23199
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G475600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G386300 expressed protein -
2 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
3 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
4 Sobic.002G251400 expressed protein -
5 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
6 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
7 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
8 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
9 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
10 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
11 Sobic.001G531200 methylthioribose kinase, putative, expressed -
12 Sobic.006G248200 - -
13 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
14 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
15 Sobic.003G157400 TPR repeat, putative, expressed -
16 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
18 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
19 Sobic.003G383500 rhodanese-like, putative, expressed -
20 Sobic.004G317900 expressed protein -


Gene co-expression network
sample Sobic001G475600 Sobic001G475600 Sobic003G386300 Sobic003G386300 Sobic001G475600--Sobic003G386300 Sobic007G013400 Sobic007G013400 Sobic001G475600--Sobic007G013400 Sobic001G040000 Sobic001G040000 Sobic001G475600--Sobic001G040000 Sobic002G251400 Sobic002G251400 Sobic001G475600--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G475600--Sobic004G335800 Sobic010G095200 Sobic010G095200 Sobic001G475600--Sobic010G095200 Sobic003G295800 Sobic003G295800 Sobic001G475600--Sobic003G295800 Sobic001G122400 Sobic001G122400 Sobic001G475600--Sobic001G122400 Sobic007G143700 Sobic007G143700 Sobic001G475600--Sobic007G143700 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic003G386300--Sobic001G527100 Sobic002G198000 Sobic002G198000 Sobic003G386300--Sobic002G198000 Sobic001G240000 Sobic001G240000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic003G386300--Sobic001G475600 Sobic003G383500 Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic009G001500 Sobic009G001500 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic001G040000--Sobic004G335800 Sobic001G391400 Sobic001G391400 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic004G116100 Sobic004G116100 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic002G251400--Sobic001G040000 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic002G251400--Sobic003G295800 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic003G324700 Sobic003G324700 Sobic004G335800--Sobic003G324700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic010G095200--Sobic003G386300 Sobic010G095200--Sobic001G122400 Sobic010G095200--Sobic001G240000 Sobic007G090537 Sobic007G090537 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic010G095200--Sobic001G527100 Sobic010G095200--Sobic002G251400 Sobic010G095200--Sobic002G198000 Sobic009G130800 Sobic009G130800 Sobic010G095200--Sobic009G130800 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic001G017000 Sobic001G017000 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic007G143700--Sobic004G335800 Sobic004G311100 Sobic004G311100 Sobic007G143700--Sobic004G311100 Sobic004G054500 Sobic004G054500 Sobic007G143700--Sobic004G054500 Sobic001G415400 Sobic001G415400 Sobic007G143700--Sobic001G415400 Sobic007G143700--Sobic003G386300 Sobic007G143700--Sobic001G122400 Sobic007G143700--Sobic004G116100 Sobic003G157400 Sobic003G157400 Sobic007G143700--Sobic003G157400 Sobic008G112300 Sobic008G112300 Sobic007G143700--Sobic008G112300
Octagon: transcription factors


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