Gene annotation
| Transcriptome id | Sobic.001G531200.1 |
|---|---|
| Synonym | Sb01g049410 |
| Functional annotation | methylthioribose kinase, putative, expressed |
| UniProt | A0A1Z5SBX0 |
| Pfam | PF03881 |
| Panther DB | PTHR12149 PTHR12149:SF8 |
| NCBI CDD | KOG3021; Predicted kinase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G61080 : Protein kinase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g02640.1 : methylthioribose kinase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000244 |
| Brachypodium | KQK23976 , KQK23977 |
| Barley | HORVU4Hr1G085930.11 , HORVU4Hr1G085930.10 , HORVU4Hr1G085930.13 , HORVU4Hr1G085930.12 , HORVU4Hr1G085930.15 , HORVU4Hr1G085930.14 , HORVU4Hr1G085930.9 , HORVU4Hr1G085930.8 , HORVU4Hr1G085930.5 , HORVU4Hr1G085930.4 , HORVU4Hr1G085930.7 , HORVU4Hr1G085930.6 , HORVU4Hr1G085930.1 , HORVU4Hr1G085930.3 , HORVU4Hr1G085930.2 |
| Wheat | TraesCS4B02G354600 , TraesCS4B02G354600 , TraesCS4D02G348300 , TraesCS4D02G348300 , TraesCS4B02G354600 , TraesCS4D02G348300 , TraesCS4D02G348300 , TraesCS4B02G354600 , TraesCS4D02G348300 , TraesCS4D02G348300 , TraesCS4B02G354600 , TraesCS5A02G492200 , TraesCS4B02G354600 , TraesCS5A02G523900 , TraesCS5A02G523900 , TraesCS5A02G523900 , TraesCS5A02G523900 |
| Populus | - |
JBrowse
| Sobic.001G531200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G248200 | - | - |
| 2 | Sobic.003G386300 | expressed protein | - |
| 3 | Sobic.001G240000 | ribosomal protein L28 protein, putative, expressed | K02902: RP-L28, MRPL28, large subunit ribosomal protein L28 |
| 4 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 5 | Sobic.001G475600 | prenyltransferase, putative, expressed | K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase |
| 6 | Sobic.001G333000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed | - |
| 7 | Sobic.001G040000 | 50S ribosomal protein L17, putative, expressed | K02879: RP-L17, MRPL17, large subunit ribosomal protein L17 |
| 8 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 9 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
| 10 | Sobic.002G341500 | rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed | - |
| 11 | Sobic.002G251400 | expressed protein | - |
| 12 | Sobic.004G054500 | porphobilinogen deaminase, chloroplast precursor, putative, expressed | K01749: hemC, hydroxymethylbilane synthase |
| 13 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 14 | Sobic.003G030900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 15 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 16 | Sobic.004G335800 | ribosomal L9, putative, expressed | K02939: RP-L9, MRPL9, large subunit ribosomal protein L9 |
| 17 | Sobic.004G234200 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 18 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 19 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 20 | Sobic.010G095200 | glutathione S-transferase, N-terminal domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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