Gene annotation
Transcriptome id Sobic.004G335800.1
Synonym Sb04g036380, RPL9
Functional annotation ribosomal L9, putative, expressed
UniProt C5XV43
Pfam PF01281 PF03948
Panther DB PTHR21368 PTHR21368:SF18
NCBI CDD KOG4607; Mitochondrial ribosomal protein L9
KEGG Orthology K02939; RP-L9, MRPL9, large subunit ribosomal protein L9
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G44890 : ribosomal protein L9
RAP-DB (Rice) LOC_Os02g57670.1 : ribosomal L9, putative, expressed
MaizeGDB (Corn) Zm00025a022514 , Zm00025a022512
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G335800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
2 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
3 Sobic.003G386300 expressed protein -
4 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
5 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
6 Sobic.003G324700 expressed protein -
7 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
8 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
9 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
10 Sobic.002G152800 RNA recognition motif containing protein, putative, expressed -
11 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
12 Sobic.002G198000 CRR6, putative, expressed -
13 Sobic.002G251400 expressed protein -
14 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
15 Sobic.001G368500 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
16 Sobic.002G271700 rhodanese-like domain containing protein, putative, expressed -
17 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
18 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
19 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase


Gene co-expression network
sample Sobic004G335800 Sobic004G335800 Sobic001G040000 Sobic001G040000 Sobic004G335800--Sobic001G040000 Sobic001G122400 Sobic001G122400 Sobic004G335800--Sobic001G122400 Sobic003G386300 Sobic003G386300 Sobic004G335800--Sobic003G386300 Sobic001G527100 Sobic001G527100 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic003G324700 Sobic003G324700 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic001G391400 Sobic001G391400 Sobic004G335800--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic004G335800--Sobic001G240000 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic002G251400 Sobic002G251400 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G122400--Sobic001G391400 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic010G095200 Sobic010G095200 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic003G386300--Sobic004G164100 Sobic001G475600 Sobic001G475600 Sobic003G386300--Sobic001G475600 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic003G328200 Sobic003G328200 Sobic001G527100--Sobic003G328200 Sobic004G116100--Sobic004G335800 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic001G453300 Sobic001G453300 Sobic004G116100--Sobic001G453300 Sobic004G116100--Sobic001G527100 Sobic004G298100 Sobic004G298100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic004G116100--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic004G116100--Sobic004G311100 Sobic003G324700--Sobic001G122400 Sobic003G324700--Sobic001G368500 Sobic003G324700--Sobic001G469933 Sobic003G324700--Sobic004G335800 Sobic006G055800 Sobic006G055800 Sobic003G324700--Sobic006G055800 Sobic002G152800 Sobic002G152800 Sobic003G324700--Sobic002G152800 Sobic003G324700--Sobic003G386300 Sobic003G432500 Sobic003G432500 Sobic003G324700--Sobic003G432500 Sobic003G324700--Sobic001G527100 Sobic007G143700--Sobic004G335800 Sobic007G143700--Sobic004G311100 Sobic004G054500 Sobic004G054500 Sobic007G143700--Sobic004G054500 Sobic001G415400 Sobic001G415400 Sobic007G143700--Sobic001G415400 Sobic007G143700--Sobic003G386300 Sobic007G143700--Sobic001G122400 Sobic007G143700--Sobic004G116100 Sobic003G157400 Sobic003G157400 Sobic007G143700--Sobic003G157400 Sobic008G112300 Sobic008G112300 Sobic007G143700--Sobic008G112300 Sobic001G391400--Sobic001G040000 Sobic001G391400--Sobic001G527100 Sobic001G391400--Sobic001G122400 Sobic001G391400--Sobic004G335800 Sobic001G391400--Sobic004G116100 Sobic001G391400--Sobic001G240000 Sobic001G391400--Sobic001G453300 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic001G240000--Sobic003G328200 Sobic001G240000--Sobic002G198000
Octagon: transcription factors


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