Gene annotation
| Transcriptome id | Sobic.002G271700.2,Sobic.002G271700.1 |
|---|---|
| Synonym | Sb02g030550 |
| Functional annotation | rhodanese-like domain containing protein, putative, expressed |
| UniProt | A0A1W0W627 , C5X648 |
| Pfam | PF00581 |
| Panther DB | PTHR12231 PTHR12231:SF112 |
| NCBI CDD | KOG1530; Rhodanese-related sulfurtransferase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G27700 : Rhodanese/Cell cycle control phosphatase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g36040.1 : rhodanese-like domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a047730 |
| Brachypodium | KQJ91138 |
| Barley | - |
| Wheat | TraesCS5A02G315800 , TraesCS5A02G315800 , TraesCS5B02G316400 |
| Populus | - |
JBrowse
| Sobic.002G271700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G335800 | ribosomal L9, putative, expressed | K02939: RP-L9, MRPL9, large subunit ribosomal protein L9 |
| 2 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 3 | Sobic.003G386300 | expressed protein | - |
| 4 | Sobic.002G341500 | rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed | - |
| 5 | Sobic.002G198000 | CRR6, putative, expressed | - |
| 6 | Sobic.010G005500 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 7 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 8 | Sobic.001G122400 | ribosomal protein S13p/S18e, putative, expressed | K02952: RP-S13, small subunit ribosomal protein S13 |
| 9 | Sobic.008G112300 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed | - |
| 10 | Sobic.004G116100 | 50S ribosomal protein L21, chloroplast precursor, putative, expressed | K02888: RP-L21, MRPL21, large subunit ribosomal protein L21 |
| 11 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 12 | Sobic.001G368500 | ribosomal protein L6, putative, expressed | K02933: RP-L6, MRPL6, large subunit ribosomal protein L6 |
| 13 | Sobic.002G152800 | RNA recognition motif containing protein, putative, expressed | - |
| 14 | Sobic.002G267900 | expressed protein | - |
| 15 | Sobic.002G198600 | -(PubMedID : 29017446)@expressed protein | - |
| 16 | Sobic.001G531200 | methylthioribose kinase, putative, expressed | - |
| 17 | Sobic.003G324700 | expressed protein | - |
| 18 | Sobic.003G433900 | expressed protein | - |
| 19 | Sobic.009G030900 | bundle sheath defective protein 2, putative, expressed | - |
| 20 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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