Gene annotation
| Transcriptome id | Sobic.008G112300.1 |
|---|---|
| Synonym | DiT1;DiT1, DiT1, Sb08g016630 |
| Functional annotation | - (PubMedID : 29017446) - (PubMedID : 26976818) citrate transporter, putative, expressed |
| UniProt | C5YP76 |
| Pfam | PF03600 |
| Panther DB | PTHR10283 PTHR10283:SF76 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT5G12860 : dicarboxylate transporter 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os12g33080.1 : 2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a054414 |
| Brachypodium | KQJ86558 |
| Barley | HORVU5Hr1G027720.1 |
| Wheat | TraesCS5A02G100600 , TraesCS5D02G113100 , TraesCS5B02G105700 |
| Populus | - |
JBrowse
| Sobic.008G112300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G311100 | -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 2 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 3 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 4 | Sobic.001G527100 | L11 domain containing ribosomal protein, putative, expressed | K02867: RP-L11, MRPL11, large subunit ribosomal protein L11 |
| 5 | Sobic.007G143700 | immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 6 | Sobic.002G297900 | CDGSH iron sulfur domain-containing protein 1, putative, expressed | - |
| 7 | Sobic.004G116100 | 50S ribosomal protein L21, chloroplast precursor, putative, expressed | K02888: RP-L21, MRPL21, large subunit ribosomal protein L21 |
| 8 | Sobic.004G317900 | expressed protein | - |
| 9 | Sobic.004G335800 | ribosomal L9, putative, expressed | K02939: RP-L9, MRPL9, large subunit ribosomal protein L9 |
| 10 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 11 | Sobic.004G024600 | expressed protein | - |
| 12 | Sobic.004G114800 | expressed protein | - |
| 13 | Sobic.004G234200 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 14 | Sobic.007G004600 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 15 | Sobic.003G295800 | ribosomal protein L13, putative, expressed | K02871: RP-L13, MRPL13, large subunit ribosomal protein L13 |
| 16 | Sobic.001G040000 | 50S ribosomal protein L17, putative, expressed | K02879: RP-L17, MRPL17, large subunit ribosomal protein L17 |
| 17 | Sobic.007G185100 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 18 | Sobic.002G271700 | rhodanese-like domain containing protein, putative, expressed | - |
| 19 | Sobic.002G341500 | rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed | - |
| 20 | Sobic.004G193400 | photosystem II 5 kDa protein, chloroplast precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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