Gene annotation
Transcriptome id Sobic.004G024600.1
Synonym LIL3:1, Sb04g002190
Functional annotation expressed protein
UniProt C5XT69
Pfam -
Panther DB PTHR14154 PTHR14154:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17600 : Chlorophyll A-B binding family protein
RAP-DB (Rice) LOC_Os02g03330.1 : expressed protein
MaizeGDB (Corn) Zm00025a018800 , Zm00025a034961
Brachypodium KQJ93069
Barley HORVU6Hr1G014500.1 , HORVU6Hr1G014500.2 , HORVU6Hr1G014500.3
Wheat TraesCS6A02G084200 , TraesCS6B02G112800 , TraesCS6D02G077700
Populus -


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cDNA sequences
Sobic.004G024600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
2 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
3 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
4 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
5 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
6 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
7 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
8 Sobic.001G475600 prenyltransferase, putative, expressed K02548: 1,4-dihydroxy-2-naphthoate polyprenyltransferase
9 Sobic.001G415400 PsbP, putative, expressed -
10 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
11 Sobic.004G317900 expressed protein -
12 Sobic.003G386300 expressed protein -
13 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
14 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
15 Sobic.004G114800 expressed protein -
16 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
17 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
18 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
19 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
20 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I


Gene co-expression network
sample Sobic004G024600 Sobic004G024600 Sobic001G040000 Sobic001G040000 Sobic004G024600--Sobic001G040000 Sobic007G143700 Sobic007G143700 Sobic004G024600--Sobic007G143700 Sobic004G335800 Sobic004G335800 Sobic004G024600--Sobic004G335800 Sobic007G185100 Sobic007G185100 Sobic004G024600--Sobic007G185100 Sobic008G112300 Sobic008G112300 Sobic004G024600--Sobic008G112300 Sobic004G311100 Sobic004G311100 Sobic004G024600--Sobic004G311100 Sobic004G054500 Sobic004G054500 Sobic004G024600--Sobic004G054500 Sobic001G475600 Sobic001G475600 Sobic004G024600--Sobic001G475600 Sobic001G415400 Sobic001G415400 Sobic004G024600--Sobic001G415400 Sobic001G040000--Sobic004G335800 Sobic001G391400 Sobic001G391400 Sobic001G040000--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic001G040000--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic002G251400 Sobic002G251400 Sobic001G040000--Sobic002G251400 Sobic004G116100 Sobic004G116100 Sobic001G040000--Sobic004G116100 Sobic001G122400 Sobic001G122400 Sobic001G040000--Sobic001G122400 Sobic003G386300 Sobic003G386300 Sobic001G040000--Sobic003G386300 Sobic007G143700--Sobic004G335800 Sobic007G143700--Sobic004G311100 Sobic007G143700--Sobic004G054500 Sobic007G143700--Sobic001G415400 Sobic007G143700--Sobic003G386300 Sobic007G143700--Sobic001G122400 Sobic007G143700--Sobic004G116100 Sobic003G157400 Sobic003G157400 Sobic007G143700--Sobic003G157400 Sobic007G143700--Sobic008G112300 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G335800--Sobic004G116100 Sobic003G324700 Sobic003G324700 Sobic004G335800--Sobic003G324700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic004G317900 Sobic004G317900 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic010G233800 Sobic010G233800 Sobic007G185100--Sobic010G233800 Sobic010G215500 Sobic010G215500 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic003G328200 Sobic003G328200 Sobic007G185100--Sobic003G328200 Sobic008G030000 Sobic008G030000 Sobic007G185100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic007G185100--Sobic004G076000 Sobic008G112300--Sobic004G311100 Sobic008G112300--Sobic003G328200 Sobic009G091800 Sobic009G091800 Sobic008G112300--Sobic009G091800 Sobic008G112300--Sobic001G527100 Sobic008G112300--Sobic007G143700 Sobic002G297900 Sobic002G297900 Sobic008G112300--Sobic002G297900 Sobic008G112300--Sobic004G116100 Sobic008G112300--Sobic004G317900 Sobic008G112300--Sobic004G335800 Sobic004G311100--Sobic008G112300 Sobic004G311100--Sobic007G143700 Sobic004G311100--Sobic003G386300 Sobic004G311100--Sobic004G335800 Sobic004G311100--Sobic001G122400 Sobic004G311100--Sobic001G527100 Sobic004G311100--Sobic004G116100 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700 Sobic001G203000 Sobic001G203000 Sobic004G054500--Sobic001G203000 Sobic008G051000 Sobic008G051000 Sobic004G054500--Sobic008G051000 Sobic004G054500--Sobic007G143700 Sobic004G054500--Sobic004G317900 Sobic004G054500--Sobic001G040000 Sobic004G054500--Sobic010G255600 Sobic004G054500--Sobic004G335800 Sobic004G054500--Sobic003G157400 Sobic004G054500--Sobic003G386300 Sobic001G475600--Sobic003G386300 Sobic007G013400 Sobic007G013400 Sobic001G475600--Sobic007G013400 Sobic001G475600--Sobic001G040000 Sobic001G475600--Sobic002G251400 Sobic001G475600--Sobic004G335800 Sobic010G095200 Sobic010G095200 Sobic001G475600--Sobic010G095200 Sobic001G475600--Sobic003G295800 Sobic001G475600--Sobic001G122400 Sobic001G475600--Sobic007G143700 Sobic001G415400--Sobic007G143700 Sobic010G277600 Sobic010G277600 Sobic001G415400--Sobic010G277600 Sobic001G527000 Sobic001G527000 Sobic001G415400--Sobic001G527000 Sobic009G030900 Sobic009G030900 Sobic001G415400--Sobic009G030900 Sobic002G198600 Sobic002G198600 Sobic001G415400--Sobic002G198600 Sobic007G004600 Sobic007G004600 Sobic001G415400--Sobic007G004600 Sobic001G041800 Sobic001G041800 Sobic001G415400--Sobic001G041800 Sobic004G175500 Sobic004G175500 Sobic001G415400--Sobic004G175500 Sobic003G132100 Sobic003G132100 Sobic001G415400--Sobic003G132100
Octagon: transcription factors


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