Gene annotation
Transcriptome id Sobic.004G298100.1
Synonym Sb04g033210
Functional annotation 50S ribosomal protein L19, chloroplast precursor, putative, expressed
UniProt C5XS12
Pfam PF01245
Panther DB PTHR15680 PTHR15680:SF10
NCBI CDD -
KEGG Orthology K02884; RP-L19, MRPL19, large subunit ribosomal protein L19
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G17560 : Ribosomal protein L19 family protein
RAP-DB (Rice) LOC_Os02g43600.1 : 50S ribosomal protein L19, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a020912
Brachypodium KQK00574
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G298100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
2 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
3 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
4 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
5 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
6 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
7 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
8 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
9 Sobic.004G317900 expressed protein -
10 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
11 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
12 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
13 Sobic.003G386300 expressed protein -
14 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
15 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
16 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
17 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
18 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
19 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
20 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9


Gene co-expression network
sample Sobic004G298100 Sobic004G298100 Sobic003G256200 Sobic003G256200 Sobic004G298100--Sobic003G256200 Sobic001G391400 Sobic001G391400 Sobic004G298100--Sobic001G391400 Sobic003G246400 Sobic003G246400 Sobic004G298100--Sobic003G246400 Sobic001G453300 Sobic001G453300 Sobic004G298100--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic004G298100--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic004G298100--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic004G298100--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G298100--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic004G298100--Sobic004G317900 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic001G191000 Sobic001G191000 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic001G391400--Sobic001G040000 Sobic001G391400--Sobic001G527100 Sobic001G122400 Sobic001G122400 Sobic001G391400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic001G391400--Sobic004G335800 Sobic001G391400--Sobic004G116100 Sobic001G391400--Sobic001G240000 Sobic001G391400--Sobic001G453300 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic010G233800 Sobic010G233800 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic001G027600 Sobic001G027600 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G383900 Sobic001G383900 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G076500 Sobic001G076500 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic004G116100--Sobic004G335800 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic004G116100--Sobic001G453300 Sobic004G116100--Sobic001G527100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic003G386300 Sobic003G386300 Sobic004G116100--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic004G116100--Sobic004G311100 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic002G251400 Sobic002G251400 Sobic001G240000--Sobic002G251400 Sobic001G240000--Sobic004G335800 Sobic001G240000--Sobic003G328200 Sobic002G198000 Sobic002G198000 Sobic001G240000--Sobic002G198000 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic004G164100 Sobic004G164100 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic001G040000--Sobic003G386300 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500
Octagon: transcription factors


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