Gene annotation
Transcriptome id Sobic.001G427000.1
Synonym Sb01g040120, RPL4
Functional annotation ribosomal protein L4, putative, expressed
UniProt C5WQ51
Pfam PF00573
Panther DB PTHR10746 PTHR10746:SF10
NCBI CDD KOG1624; Mitochondrial/chloroplast ribosomal protein L4
KEGG Orthology K02926; RP-L4, MRPL4, large subunit ribosomal protein L4
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G07320 : ribosomal protein L4
RAP-DB (Rice) LOC_Os03g15870.1 : ribosomal protein L4, putative, expressed
MaizeGDB (Corn) Zm00025a001731
Brachypodium KQK22431
Barley HORVU4Hr1G060970.1 , HORVU4Hr1G060970.3 , HORVU4Hr1G060970.4 , HORVU4Hr1G060970.5 , HORVU4Hr1G060970.6
Wheat TraesCS4A02G091100 , TraesCS4D02G214300 , TraesCS4B02G213600
Populus -


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cDNA sequences
Sobic.001G427000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
2 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
3 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
4 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
5 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
6 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
7 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
8 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
9 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
11 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
12 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
13 Sobic.004G317900 expressed protein -
14 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
15 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
16 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
17 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
18 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
19 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
20 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21


Gene co-expression network
sample Sobic001G427000 Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G427000--Sobic001G076500 Sobic001G027600 Sobic001G027600 Sobic001G427000--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic001G427000--Sobic001G453300 Sobic003G132600 Sobic003G132600 Sobic001G427000--Sobic003G132600 Sobic010G233800 Sobic010G233800 Sobic001G427000--Sobic010G233800 Sobic003G256200 Sobic003G256200 Sobic001G427000--Sobic003G256200 Sobic003G393800 Sobic003G393800 Sobic001G427000--Sobic003G393800 Sobic003G246400 Sobic003G246400 Sobic001G427000--Sobic003G246400 Sobic001G383900 Sobic001G383900 Sobic001G427000--Sobic001G383900 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic004G317900 Sobic004G317900 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic003G295800 Sobic003G295800 Sobic001G027600--Sobic003G295800 Sobic004G191200 Sobic004G191200 Sobic001G027600--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic001G027600--Sobic006G280050 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic003G132600--Sobic001G427000 Sobic003G132600--Sobic001G453300 Sobic003G132600--Sobic001G383900 Sobic003G132600--Sobic001G076500 Sobic003G132600--Sobic001G027600 Sobic003G132600--Sobic001G391400 Sobic003G132600--Sobic003G256200 Sobic002G343700 Sobic002G343700 Sobic003G132600--Sobic002G343700 Sobic003G132600--Sobic003G393800 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic004G116100 Sobic004G116100 Sobic010G233800--Sobic004G116100 Sobic003G256200--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic001G411300 Sobic001G411300 Sobic003G256200--Sobic001G411300 Sobic001G191000 Sobic001G191000 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic003G256200--Sobic001G427000 Sobic003G256200--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic003G256200--Sobic001G240000 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic009G179800 Sobic009G179800 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic003G393800--Sobic001G453300 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G246600 Sobic003G246600 Sobic003G393800--Sobic003G246600 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G383900--Sobic001G427000 Sobic001G383900--Sobic001G391400 Sobic009G001500 Sobic009G001500 Sobic001G383900--Sobic009G001500
Octagon: transcription factors


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