Gene annotation
Transcriptome id Sobic.004G191200.1
Synonym PQL2, Sb04g023940, PQL1
Functional annotation PsbQ-like protein 1 (PubMedID : 26186930)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxygen evolving enhancer protein 3, identical, putative, expressed
UniProt C5XVQ8
Pfam PF05757
Panther DB PTHR33399 PTHR33399:SF5
NCBI CDD -
KEGG Orthology K08901; photosystem II oxygen-evolving enhancer protein 3
Gene Ontology GO:0015979; photosynthesis GO:0009654photosystem II oxygen evolving complex GO:0009523photosystem II GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G14150 : PsbQ-like 2
RAP-DB (Rice) LOC_Os02g36850.1 : oxygen evolving enhancer protein 3, identical, putative, expressed
MaizeGDB (Corn) Zm00025a020806 , Zm00025a031736
Brachypodium KQK00028
Barley HORVU6Hr1G051650.2 , HORVU6Hr1G051650.1
Wheat TraesCS6B02G227900 , TraesCS6D02G187800 , TraesCS4D02G045400 , TraesCS6A02G206600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
2 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
3 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
4 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
5 Sobic.004G317900 expressed protein -
6 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
7 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
8 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
9 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
10 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
11 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
12 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
13 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
14 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
15 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
16 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
17 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
18 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
19 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
20 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin


Gene co-expression network
sample Sobic004G191200 Sobic004G191200 Sobic001G027600 Sobic001G027600 Sobic004G191200--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic001G191000 Sobic001G191000 Sobic004G191200--Sobic001G191000 Sobic004G317900 Sobic004G317900 Sobic004G191200--Sobic004G317900 Sobic001G453300 Sobic001G453300 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic003G246400 Sobic003G246400 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic001G027600--Sobic001G453300 Sobic001G427000 Sobic001G427000 Sobic001G027600--Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G027600--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G383900 Sobic001G383900 Sobic001G027600--Sobic001G383900 Sobic003G295800 Sobic003G295800 Sobic001G027600--Sobic003G295800 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic001G017000 Sobic001G017000 Sobic006G280050--Sobic001G017000 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300 Sobic003G202300--Sobic004G191200 Sobic008G030000 Sobic008G030000 Sobic003G202300--Sobic008G030000 Sobic003G202300--Sobic001G453300 Sobic004G168500 Sobic004G168500 Sobic003G202300--Sobic004G168500 Sobic009G212000 Sobic009G212000 Sobic003G202300--Sobic009G212000 Sobic003G202300--Sobic001G027600 Sobic001G094200 Sobic001G094200 Sobic003G202300--Sobic001G094200 Sobic003G202300--Sobic004G317900 Sobic007G185100 Sobic007G185100 Sobic003G202300--Sobic007G185100 Sobic001G191000--Sobic006G280050 Sobic003G256200 Sobic003G256200 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G191000--Sobic001G027600 Sobic001G411300 Sobic001G411300 Sobic001G191000--Sobic001G411300 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic001G191000--Sobic004G191200 Sobic006G107600 Sobic006G107600 Sobic001G191000--Sobic006G107600 Sobic004G317900--Sobic003G246400 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic010G233800 Sobic010G233800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic004G317900--Sobic003G328200 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic007G171800 Sobic007G171800 Sobic007G034500--Sobic007G171800 Sobic007G034500--Sobic004G044000 Sobic007G034500--Sobic006G280050 Sobic007G034500--Sobic004G191200 Sobic001G357200 Sobic001G357200 Sobic007G034500--Sobic001G357200 Sobic009G001500 Sobic009G001500 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic007G034500--Sobic001G191000 Sobic007G034500--Sobic001G027600 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic002G305700--Sobic001G191000 Sobic001G333000 Sobic001G333000 Sobic002G305700--Sobic001G333000 Sobic002G305700--Sobic003G256200 Sobic002G305700--Sobic006G107600 Sobic002G305700--Sobic004G191200 Sobic002G305700--Sobic006G280050 Sobic006G248200 Sobic006G248200 Sobic002G305700--Sobic006G248200 Sobic002G305700--Sobic009G212000 Sobic001G240000 Sobic001G240000 Sobic002G305700--Sobic001G240000
Octagon: transcription factors


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