Gene annotation
Transcriptome id Sobic.002G305700.1
Synonym NDF4, Sb02g033590
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5X963
Pfam PF00111
Panther DB PTHR23426 PTHR23426:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT3G16250 : NDH-dependent cyclic electron flow 1
RAP-DB (Rice) LOC_Os07g30670.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048081 , Zm00025a055559 , Zm00025a014682
Brachypodium KQK16185
Barley HORVU7Hr1G023140.7 , HORVU7Hr1G023140.6 , HORVU7Hr1G023140.5 , HORVU7Hr1G023140.3 , HORVU7Hr1G023140.2 , HORVU7Hr1G023140.1 , HORVU7Hr1G023140.9 , HORVU7Hr1G023140.8 , HORVU7Hr1G023140.11 , HORVU7Hr1G023140.10
Wheat TraesCS7B02G006600 , TraesCS7A02G108600 , TraesCS7D02G103500
Populus -


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cDNA sequences
Sobic.002G305700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
2 Sobic.001G333000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
4 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
5 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
6 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
7 Sobic.006G248200 - -
8 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
9 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
10 Sobic.004G314800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
12 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
13 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
14 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
15 Sobic.002G251400 expressed protein -
16 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
17 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
18 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
20 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin


Gene co-expression network
sample Sobic002G305700 Sobic002G305700 Sobic001G191000 Sobic001G191000 Sobic002G305700--Sobic001G191000 Sobic001G333000 Sobic001G333000 Sobic002G305700--Sobic001G333000 Sobic003G256200 Sobic003G256200 Sobic002G305700--Sobic003G256200 Sobic006G107600 Sobic006G107600 Sobic002G305700--Sobic006G107600 Sobic004G191200 Sobic004G191200 Sobic002G305700--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic002G305700--Sobic006G280050 Sobic006G248200 Sobic006G248200 Sobic002G305700--Sobic006G248200 Sobic009G212000 Sobic009G212000 Sobic002G305700--Sobic009G212000 Sobic001G240000 Sobic001G240000 Sobic002G305700--Sobic001G240000 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic003G246400 Sobic003G246400 Sobic001G191000--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G191000--Sobic001G027600 Sobic001G411300 Sobic001G411300 Sobic001G191000--Sobic001G411300 Sobic001G191000--Sobic002G305700 Sobic001G453300 Sobic001G453300 Sobic001G191000--Sobic001G453300 Sobic001G191000--Sobic004G191200 Sobic001G191000--Sobic006G107600 Sobic003G221700 Sobic003G221700 Sobic001G333000--Sobic003G221700 Sobic001G333000--Sobic002G305700 Sobic001G531200 Sobic001G531200 Sobic001G333000--Sobic001G531200 Sobic010G095200 Sobic010G095200 Sobic001G333000--Sobic010G095200 Sobic001G333000--Sobic006G248200 Sobic001G333000--Sobic001G240000 Sobic003G386300 Sobic003G386300 Sobic001G333000--Sobic003G386300 Sobic002G251400 Sobic002G251400 Sobic001G333000--Sobic002G251400 Sobic002G297400 Sobic002G297400 Sobic001G333000--Sobic002G297400 Sobic003G256200--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic003G256200--Sobic001G391400 Sobic003G256200--Sobic001G240000 Sobic006G107600--Sobic003G256200 Sobic006G107600--Sobic001G240000 Sobic007G171800 Sobic007G171800 Sobic006G107600--Sobic007G171800 Sobic001G040000 Sobic001G040000 Sobic006G107600--Sobic001G040000 Sobic006G107600--Sobic001G391400 Sobic006G107600--Sobic002G305700 Sobic001G122400 Sobic001G122400 Sobic006G107600--Sobic001G122400 Sobic006G107600--Sobic001G191000 Sobic006G107600--Sobic001G453300 Sobic004G191200--Sobic001G027600 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G317900 Sobic004G317900 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic004G191200--Sobic003G246400 Sobic004G191200--Sobic002G305700 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic004G044000 Sobic004G044000 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic001G017000 Sobic001G017000 Sobic006G280050--Sobic001G017000 Sobic001G076500 Sobic001G076500 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300 Sobic006G248200--Sobic003G386300 Sobic006G248200--Sobic001G240000 Sobic006G248200--Sobic001G531200 Sobic002G198600 Sobic002G198600 Sobic006G248200--Sobic002G198600 Sobic003G030900 Sobic003G030900 Sobic006G248200--Sobic003G030900 Sobic001G475600 Sobic001G475600 Sobic006G248200--Sobic001G475600 Sobic004G054500 Sobic004G054500 Sobic006G248200--Sobic004G054500 Sobic006G248200--Sobic002G305700 Sobic004G311100 Sobic004G311100 Sobic006G248200--Sobic004G311100 Sobic009G212000--Sobic002G305700 Sobic009G212000--Sobic003G202300 Sobic009G212000--Sobic004G191200 Sobic002G190100 Sobic002G190100 Sobic009G212000--Sobic002G190100 Sobic009G212000--Sobic003G256200 Sobic009G212000--Sobic010G095200 Sobic009G212000--Sobic001G453300 Sobic009G212000--Sobic004G298100 Sobic002G200200 Sobic002G200200 Sobic009G212000--Sobic002G200200 Sobic001G527100 Sobic001G527100 Sobic001G240000--Sobic001G527100 Sobic001G240000--Sobic001G040000 Sobic001G240000--Sobic001G122400 Sobic001G240000--Sobic003G386300 Sobic001G240000--Sobic001G391400 Sobic001G240000--Sobic002G251400 Sobic004G335800 Sobic004G335800 Sobic001G240000--Sobic004G335800 Sobic003G328200 Sobic003G328200 Sobic001G240000--Sobic003G328200 Sobic002G198000 Sobic002G198000 Sobic001G240000--Sobic002G198000
Octagon: transcription factors


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