Gene annotation
Transcriptome id Sobic.001G027600.1
Synonym Sb01g002610
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ribosomal L18p/L5e family protein, putative, expressed
UniProt C5WU27
Pfam PF00861
Panther DB PTHR12899
NCBI CDD -
KEGG Orthology K02881; RP-L18, MRPL18, large subunit ribosomal protein L18
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G48350 : Ribosomal L18p/L5e family protein
RAP-DB (Rice) LOC_Os03g61260.1 : ribosomal L18p/L5e family protein, putative, expressed
MaizeGDB (Corn) Zm00025a008892
Brachypodium -
Barley HORVU5Hr1G115340.1 , HORVU5Hr1G115340.3 , HORVU5Hr1G115340.2
Wheat TraesCS5B02G503800 , TraesCS4A02G368800 , TraesCS5D02G504600
Populus -


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cDNA sequences
Sobic.001G027600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
2 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
3 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
4 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
5 Sobic.004G317900 expressed protein -
6 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
8 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
9 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
10 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
11 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
12 Sobic.009G098100 T-complex protein, putative, expressed -
13 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
14 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
16 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
17 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
18 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
19 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
20 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P


Gene co-expression network
sample Sobic001G027600 Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic001G027600--Sobic001G453300 Sobic001G427000 Sobic001G427000 Sobic001G027600--Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G027600--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G027600--Sobic004G044000 Sobic004G317900 Sobic004G317900 Sobic001G027600--Sobic004G317900 Sobic001G383900 Sobic001G383900 Sobic001G027600--Sobic001G383900 Sobic003G295800 Sobic003G295800 Sobic001G027600--Sobic003G295800 Sobic004G191200 Sobic004G191200 Sobic001G027600--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic001G027600--Sobic006G280050 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic003G256200 Sobic003G256200 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic010G233800 Sobic010G233800 Sobic001G453300--Sobic010G233800 Sobic003G246400 Sobic003G246400 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic003G393800 Sobic003G393800 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic001G076500--Sobic003G132600 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic004G044000--Sobic001G027600 Sobic004G044000--Sobic001G383900 Sobic004G044000--Sobic006G280050 Sobic009G001500 Sobic009G001500 Sobic004G044000--Sobic009G001500 Sobic003G030900 Sobic003G030900 Sobic004G044000--Sobic003G030900 Sobic007G013400 Sobic007G013400 Sobic004G044000--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic004G044000--Sobic002G242600 Sobic004G044000--Sobic001G076500 Sobic007G034500 Sobic007G034500 Sobic004G044000--Sobic007G034500 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic001G383900--Sobic001G453300 Sobic001G383900--Sobic001G027600 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic001G383900--Sobic003G132600 Sobic001G383900--Sobic001G427000 Sobic001G383900--Sobic001G391400 Sobic001G383900--Sobic009G001500 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic003G295800--Sobic001G027600 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic004G191200--Sobic001G027600 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic001G191000 Sobic001G191000 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic004G191200--Sobic007G034500 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic006G280050--Sobic001G017000 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300
Octagon: transcription factors


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