Gene annotation
Transcriptome id Sobic.010G233800.1
Synonym Sb10g027590
Functional annotation ribosomal protein L24, putative, expressed
UniProt C5Z876
Pfam PF00467
Panther DB PTHR12903 PTHR12903:SF1
NCBI CDD KOG1708; Mitochondrial/chloroplast ribosomal protein L24
KEGG Orthology K02895; RP-L24, MRPL24, large subunit ribosomal protein L24
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G54600 : Translation protein SH3-like family protein
RAP-DB (Rice) LOC_Os06g46930.1 : ribosomal protein L24, putative, expressed
MaizeGDB (Corn) Zm00025a018157
Brachypodium KQK17204
Barley -
Wheat TraesCS7D02G439900 , TraesCS7B02G350400 , TraesCS7A02G450600
Populus -


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cDNA sequences
Sobic.010G233800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
2 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
3 Sobic.004G317900 expressed protein -
4 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
5 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
6 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
7 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
8 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
9 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
10 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
11 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
12 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
13 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
14 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
15 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
16 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
17 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
18 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
19 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
20 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G233800 Sobic010G233800 Sobic001G076500 Sobic001G076500 Sobic010G233800--Sobic001G076500 Sobic001G453300 Sobic001G453300 Sobic010G233800--Sobic001G453300 Sobic004G317900 Sobic004G317900 Sobic010G233800--Sobic004G317900 Sobic001G427000 Sobic001G427000 Sobic010G233800--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic010G233800--Sobic003G393800 Sobic003G246400 Sobic003G246400 Sobic010G233800--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic004G116100 Sobic004G116100 Sobic010G233800--Sobic004G116100 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G383900 Sobic001G383900 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic003G132600 Sobic003G132600 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic003G256200 Sobic003G256200 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic004G317900--Sobic003G246400 Sobic004G317900--Sobic007G185100 Sobic003G295800 Sobic003G295800 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic004G317900--Sobic003G328200 Sobic001G017000 Sobic001G017000 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic009G179800 Sobic009G179800 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic003G393800--Sobic001G453300 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G246600 Sobic003G246600 Sobic003G393800--Sobic003G246600 Sobic003G246400--Sobic004G317900 Sobic001G411300 Sobic001G411300 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic004G191200 Sobic004G191200 Sobic001G027600--Sobic004G191200 Sobic006G280050 Sobic006G280050 Sobic001G027600--Sobic006G280050 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic007G185100--Sobic010G233800 Sobic010G215500 Sobic010G215500 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic007G185100--Sobic003G328200 Sobic008G030000 Sobic008G030000 Sobic007G185100--Sobic008G030000 Sobic004G076000 Sobic004G076000 Sobic007G185100--Sobic004G076000 Sobic004G335800 Sobic004G335800 Sobic004G116100--Sobic004G335800 Sobic001G040000 Sobic001G040000 Sobic004G116100--Sobic001G040000 Sobic004G116100--Sobic001G391400 Sobic004G116100--Sobic001G453300 Sobic001G527100 Sobic001G527100 Sobic004G116100--Sobic001G527100 Sobic004G116100--Sobic004G298100 Sobic004G116100--Sobic003G328200 Sobic003G386300 Sobic003G386300 Sobic004G116100--Sobic003G386300 Sobic004G311100 Sobic004G311100 Sobic004G116100--Sobic004G311100
Octagon: transcription factors


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