Gene annotation
Transcriptome id Sobic.001G094200.1
Synonym Sb01g008440
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calcium homeostasis regulator CHoR1, putative, expressed
UniProt C5X182
Pfam -
Panther DB PTHR36770 PTHR36770:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55250 : -
RAP-DB (Rice) LOC_Os05g45030.1 : calcium homeostasis regulator CHoR1, putative, expressed
MaizeGDB (Corn) Zm00025a016828
Brachypodium KQK05293
Barley HORVU1Hr1G081980.1 , HORVU1Hr1G081980.3 , HORVU1Hr1G081980.2
Wheat TraesCS1A02G346600 , TraesCS1D02G349400 , TraesCS1B02G360500 , TraesCS1D02G349400
Populus -


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cDNA sequences
Sobic.001G094200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
2 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
3 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
4 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
5 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
6 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
7 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
8 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
9 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
10 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
11 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
12 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
13 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
14 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
15 Sobic.009G179800 - -
16 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
17 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
19 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
20 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P


Gene co-expression network
sample Sobic001G094200 Sobic001G094200 Sobic003G256200 Sobic003G256200 Sobic001G094200--Sobic003G256200 Sobic003G246400 Sobic003G246400 Sobic001G094200--Sobic003G246400 Sobic010G233800 Sobic010G233800 Sobic001G094200--Sobic010G233800 Sobic004G191200 Sobic004G191200 Sobic001G094200--Sobic004G191200 Sobic001G453300 Sobic001G453300 Sobic001G094200--Sobic001G453300 Sobic001G191000 Sobic001G191000 Sobic001G094200--Sobic001G191000 Sobic001G427000 Sobic001G427000 Sobic001G094200--Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G094200--Sobic001G076500 Sobic001G411300 Sobic001G411300 Sobic001G094200--Sobic001G411300 Sobic003G256200--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic003G256200--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic003G256200--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic003G256200--Sobic001G240000 Sobic004G317900 Sobic004G317900 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic004G116100 Sobic004G116100 Sobic010G233800--Sobic004G116100 Sobic004G191200--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G383900 Sobic001G383900 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G191000--Sobic001G027600 Sobic001G191000--Sobic001G411300 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic001G191000--Sobic004G191200 Sobic001G191000--Sobic006G107600 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic001G411300--Sobic003G246400 Sobic001G411300--Sobic003G256200 Sobic001G411300--Sobic001G191000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic001G411300--Sobic006G280050 Sobic001G411300--Sobic001G453300 Sobic001G411300--Sobic004G298100 Sobic009G179800 Sobic009G179800 Sobic001G411300--Sobic009G179800
Octagon: transcription factors


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