Gene annotation
Transcriptome id Sobic.009G179800.2
Synonym Sb09g024020
Functional annotation -
UniProt C5Z081
Pfam -
Panther DB PTHR36042 PTHR36042:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51510 : -
RAP-DB (Rice) LOC_Os05g41190.1 : expressed protein
MaizeGDB (Corn) Zm00025a044072
Brachypodium -
Barley HORVU0Hr1G001170.3 , HORVU1Hr1G068500.1 , HORVU1Hr1G068500.2 , HORVU1Hr1G068500.3 , HORVU0Hr1G001170.1 , HORVU0Hr1G001170.2
Wheat TraesCS1A02G308500
Populus -


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cDNA sequences
Sobic.009G179800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
2 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
3 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
4 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
5 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
6 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
7 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
8 Sobic.005G128100 acyl carrier protein, putative, expressed -
9 Sobic.003G239300 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.002G383400 Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed -
11 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
12 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
13 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
14 Sobic.002G297300 expressed protein -
15 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
16 Sobic.004G317900 expressed protein -
17 Sobic.003G433900 expressed protein -
18 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
19 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
20 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic009G179800 Sobic009G179800 Sobic009G130700 Sobic009G130700 Sobic009G179800--Sobic009G130700 Sobic003G393800 Sobic003G393800 Sobic009G179800--Sobic003G393800 Sobic003G246400 Sobic003G246400 Sobic009G179800--Sobic003G246400 Sobic003G246600 Sobic003G246600 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic001G411300 Sobic001G411300 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic005G128100 Sobic005G128100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300 Sobic002G297300 Sobic002G297300 Sobic009G130700--Sobic002G297300 Sobic009G130700--Sobic009G179800 Sobic003G433900 Sobic003G433900 Sobic009G130700--Sobic003G433900 Sobic009G091800 Sobic009G091800 Sobic009G130700--Sobic009G091800 Sobic009G130700--Sobic003G246400 Sobic009G130700--Sobic001G382100 Sobic004G238500 Sobic004G238500 Sobic009G130700--Sobic004G238500 Sobic010G022100 Sobic010G022100 Sobic009G130700--Sobic010G022100 Sobic002G329600 Sobic002G329600 Sobic009G130700--Sobic002G329600 Sobic010G233800 Sobic010G233800 Sobic003G393800--Sobic010G233800 Sobic001G076500 Sobic001G076500 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic003G393800--Sobic009G179800 Sobic001G427000 Sobic001G427000 Sobic003G393800--Sobic001G427000 Sobic001G453300 Sobic001G453300 Sobic003G393800--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic003G393800--Sobic004G116100 Sobic003G393800--Sobic005G128100 Sobic003G393800--Sobic003G246600 Sobic004G317900 Sobic004G317900 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic003G246600--Sobic003G393800 Sobic003G246600--Sobic009G179800 Sobic003G246600--Sobic003G246400 Sobic003G246600--Sobic010G233800 Sobic003G246600--Sobic001G411300 Sobic003G246600--Sobic001G076500 Sobic003G246600--Sobic001G427000 Sobic006G268200 Sobic006G268200 Sobic003G246600--Sobic006G268200 Sobic001G094200 Sobic001G094200 Sobic003G246600--Sobic001G094200 Sobic010G072900--Sobic009G179800 Sobic010G072900--Sobic010G233800 Sobic010G072900--Sobic004G298100 Sobic010G072900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic010G072900--Sobic007G185100 Sobic010G072900--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic010G072900--Sobic010G255600 Sobic010G072900--Sobic003G393800 Sobic010G072900--Sobic001G427000 Sobic001G411300--Sobic003G246400 Sobic001G411300--Sobic003G256200 Sobic001G411300--Sobic001G191000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic006G280050 Sobic006G280050 Sobic001G411300--Sobic006G280050 Sobic001G411300--Sobic001G453300 Sobic001G411300--Sobic004G298100 Sobic001G411300--Sobic009G179800 Sobic001G382100--Sobic010G255600 Sobic003G099400 Sobic003G099400 Sobic001G382100--Sobic003G099400 Sobic001G382100--Sobic004G238500 Sobic008G051000 Sobic008G051000 Sobic001G382100--Sobic008G051000 Sobic001G203000 Sobic001G203000 Sobic001G382100--Sobic001G203000 Sobic009G091850 Sobic009G091850 Sobic001G382100--Sobic009G091850 Sobic007G116950 Sobic007G116950 Sobic001G382100--Sobic007G116950 Sobic004G114800 Sobic004G114800 Sobic001G382100--Sobic004G114800 Sobic006G100900 Sobic006G100900 Sobic001G382100--Sobic006G100900 Sobic005G128100--Sobic003G393800 Sobic005G128100--Sobic009G179800 Sobic002G077000 Sobic002G077000 Sobic005G128100--Sobic002G077000 Sobic005G128100--Sobic001G411300 Sobic005G128100--Sobic003G256200 Sobic002G343700 Sobic002G343700 Sobic005G128100--Sobic002G343700 Sobic005G128100--Sobic003G246600 Sobic005G128100--Sobic001G427000 Sobic003G132600 Sobic003G132600 Sobic005G128100--Sobic003G132600 Sobic007G212400 Sobic007G212400 Sobic003G239300--Sobic007G212400 Sobic002G383400 Sobic002G383400 Sobic003G239300--Sobic002G383400 Sobic003G239300--Sobic009G130700 Sobic003G239300--Sobic009G179800 Sobic003G239300--Sobic001G382100 Sobic003G239300--Sobic003G099400 Sobic002G264800 Sobic002G264800 Sobic003G239300--Sobic002G264800 Sobic003G239300--Sobic002G297300 Sobic003G239300--Sobic002G329600
Octagon: transcription factors


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