Gene annotation
| Transcriptome id | Sobic.002G383400.1 |
|---|---|
| Synonym | Sb02g039970 |
| Functional annotation | Protein oxidoreductase (Os) (PubMedID : 27208977) amine oxidase family protein, putative, expressed |
| UniProt | C5X2L2 |
| Pfam | PF13450 |
| Panther DB | PTHR10742 PTHR10742:SF287 |
| NCBI CDD | KOG0029; Amine oxidase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G09580 : FAD/NAD(P)-binding oxidoreductase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g43370.1 : amine oxidase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048824 |
| Brachypodium | KQK15118 |
| Barley | HORVU2Hr1G037360.1 , HORVU2Hr1G028980.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G383400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G297300 | expressed protein | - |
| 2 | Sobic.003G239300 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 3 | Sobic.009G130700 | lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed | - |
| 4 | Sobic.001G206200 | oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed | K00218: protochlorophyllide reductase |
| 5 | Sobic.004G193400 | photosystem II 5 kDa protein, chloroplast precursor, putative, expressed | - |
| 6 | Sobic.002G414400 | -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed | - |
| 7 | Sobic.009G179800 | - | - |
| 8 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 9 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 10 | Sobic.004G234200 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 11 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 12 | Sobic.006G100900 | cytokinin-O-glucosyltransferase 2, putative, expressed | - |
| 13 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 14 | Sobic.010G000500 | Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed | K02638: plastocyanin |
| 15 | Sobic.007G212400 | thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed | - |
| 16 | Sobic.003G246400 | ribosomal protein L7/L12 C-terminal domain containing protein, expressed | K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12 |
| 17 | Sobic.003G246600 | plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed | K19035: 50S ribosomal protein 6 |
| 18 | Sobic.002G338000 | Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08915: light-harvesting complex II chlorophyll a/b binding protein 4 |
| 19 | Sobic.004G114800 | expressed protein | - |
| 20 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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