Gene annotation
Transcriptome id Sobic.001G206200.1
Synonym Sb01g018230, PORB
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
UniProt C5WXA8
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF393
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology K00218; protochlorophyllide reductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G54190 : protochlorophyllide oxidoreductase A
RAP-DB (Rice) LOC_Os10g35370.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
MaizeGDB (Corn) Zm00025a017505 , Zm00025a009283 , Zm00025a006463
Brachypodium KQJ85303 , KQK01659
Barley HORVU2Hr1G119090.1 , HORVU2Hr1G119090.4 , HORVU2Hr1G119090.2 , HORVU2Hr1G119090.3 , HORVU2Hr1G119050.2 , HORVU2Hr1G119050.3 , HORVU2Hr1G119050.1 , HORVU1Hr1G044680.1 , HORVU1Hr1G044680.3 , HORVU1Hr1G044680.2 , HORVU1Hr1G044680.4
Wheat TraesCS2D02G563600 , TraesCS2D02G563700 , TraesCS1D02G168700 , TraesCS1D02G168700 , TraesCS2A02G590600 , TraesCS1A02G171000 , TraesCS1A02G171000 , TraesCS2B02G593000 , TraesCS2B02G593000 , TraesCS1B02G186300
Populus -


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cDNA sequences
Sobic.001G206200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
2 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
3 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
4 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
5 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
6 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
7 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
8 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
9 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
10 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
11 Sobic.002G297300 expressed protein -
12 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
13 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
14 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
15 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
16 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
17 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
18 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
19 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
20 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1


Gene co-expression network
sample Sobic001G206200 Sobic001G206200 Sobic002G338000 Sobic002G338000 Sobic001G206200--Sobic002G338000 Sobic003G055300 Sobic003G055300 Sobic001G206200--Sobic003G055300 Sobic010G000500 Sobic010G000500 Sobic001G206200--Sobic010G000500 Sobic002G414400 Sobic002G414400 Sobic001G206200--Sobic002G414400 Sobic002G030200 Sobic002G030200 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic004G234200 Sobic004G234200 Sobic001G206200--Sobic004G234200 Sobic001G046900 Sobic001G046900 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600 Sobic003G055300--Sobic002G338000 Sobic003G055300--Sobic001G206200 Sobic003G055300--Sobic010G000500 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic005G087000 Sobic005G087000 Sobic003G055300--Sobic005G087000 Sobic009G229700 Sobic009G229700 Sobic003G055300--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic003G055300--Sobic002G242000 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic004G193400 Sobic004G193400 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G297300 Sobic002G297300 Sobic002G414400--Sobic002G297300 Sobic002G288300 Sobic002G288300 Sobic002G414400--Sobic002G288300 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic002G339200 Sobic002G339200 Sobic009G234600--Sobic002G339200 Sobic006G264201 Sobic006G264201 Sobic009G234600--Sobic006G264201 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic001G078000 Sobic001G078000 Sobic009G234600--Sobic001G078000 Sobic009G091800 Sobic009G091800 Sobic004G234200--Sobic009G091800 Sobic010G022100 Sobic010G022100 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic008G051000 Sobic008G051000 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic001G046900--Sobic002G352100 Sobic004G056900 Sobic004G056900 Sobic001G046900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic001G046900--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic002G329600--Sobic007G029300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic001G448400 Sobic001G448400 Sobic002G329600--Sobic001G448400
Octagon: transcription factors


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