Gene annotation
Transcriptome id Sobic.002G414400.1
Synonym PSBX, Sb02g042680
Functional annotation - (PubMedID : 29017446)
ultraviolet-B-repressible protein, putative, expressed
UniProt C5X5I3
Pfam PF06596
Panther DB PTHR34455 PTHR34455:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015979photosynthesis GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR AT2G06520 : photosystem II subunit X
RAP-DB (Rice) LOC_Os07g47640.1 : ultraviolet-B-repressible protein, putative, expressed
MaizeGDB (Corn) Zm00025a049130
Brachypodium KQK14683
Barley HORVU3Hr1G105780.1 , HORVU2Hr1G019270.1 , HORVU2Hr1G019270.3 , HORVU2Hr1G019270.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G414400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
2 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
3 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
4 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
5 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
6 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
7 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
8 Sobic.002G297300 expressed protein -
9 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
11 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
12 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
13 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
14 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
16 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
17 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
18 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
19 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
20 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN


Gene co-expression network
sample Sobic002G414400 Sobic002G414400 Sobic002G338000 Sobic002G338000 Sobic002G414400--Sobic002G338000 Sobic010G000500 Sobic010G000500 Sobic002G414400--Sobic010G000500 Sobic001G206200 Sobic001G206200 Sobic002G414400--Sobic001G206200 Sobic004G193400 Sobic004G193400 Sobic002G414400--Sobic004G193400 Sobic002G030200 Sobic002G030200 Sobic002G414400--Sobic002G030200 Sobic004G234200 Sobic004G234200 Sobic002G414400--Sobic004G234200 Sobic003G055300 Sobic003G055300 Sobic002G414400--Sobic003G055300 Sobic002G297300 Sobic002G297300 Sobic002G414400--Sobic002G297300 Sobic002G288300 Sobic002G288300 Sobic002G414400--Sobic002G288300 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic001G046900 Sobic001G046900 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic002G338000--Sobic001G177000 Sobic009G234600 Sobic009G234600 Sobic002G338000--Sobic009G234600 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic004G193400--Sobic002G297300 Sobic007G023300 Sobic007G023300 Sobic004G193400--Sobic007G023300 Sobic009G091800 Sobic009G091800 Sobic004G193400--Sobic009G091800 Sobic004G193400--Sobic002G288300 Sobic010G022100 Sobic010G022100 Sobic004G193400--Sobic010G022100 Sobic008G117400 Sobic008G117400 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic008G051000 Sobic008G051000 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic003G055300--Sobic002G338000 Sobic003G055300--Sobic001G206200 Sobic003G055300--Sobic010G000500 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic005G087000 Sobic005G087000 Sobic003G055300--Sobic005G087000 Sobic009G229700 Sobic009G229700 Sobic003G055300--Sobic009G229700 Sobic003G055300--Sobic002G242000 Sobic002G297300--Sobic009G091800 Sobic002G297300--Sobic002G329600 Sobic002G297300--Sobic004G234200 Sobic009G130700 Sobic009G130700 Sobic002G297300--Sobic009G130700 Sobic002G297300--Sobic002G030200 Sobic006G264201 Sobic006G264201 Sobic002G297300--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic002G297300--Sobic004G238500 Sobic002G297300--Sobic010G000500 Sobic002G297300--Sobic008G051000 Sobic002G288300--Sobic009G091800 Sobic002G288300--Sobic010G022100 Sobic002G288300--Sobic010G000500 Sobic002G288300--Sobic004G234200 Sobic002G288300--Sobic002G338000 Sobic002G288300--Sobic002G414400 Sobic010G011800 Sobic010G011800 Sobic002G288300--Sobic010G011800 Sobic002G288300--Sobic004G193400 Sobic002G288300--Sobic006G264900
Octagon: transcription factors


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