Gene annotation
Transcriptome id Sobic.006G264201.1
Synonym -
Functional annotation -
UniProt A0A1Z5RFN9
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF2
NCBI CDD -
KEGG Orthology K08917; light-harvesting complex II chlorophyll a/b binding protein 6
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT1G15820 : light harvesting complex photosystem II subunit 6
RAP-DB (Rice) LOC_Os04g38410.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a009331 , Zm00025a057365
Brachypodium KQJ82938
Barley HORVU2Hr1G079910.2 , HORVU2Hr1G079910.3 , HORVU2Hr1G079910.1 , HORVU2Hr1G079910.6 , HORVU2Hr1G079910.7 , HORVU2Hr1G079910.4 , HORVU2Hr1G079910.5 , HORVU2Hr1G079910.8 , HORVU2Hr1G079920.3 , HORVU2Hr1G079920.2 , HORVU2Hr1G079920.1 , HORVU2Hr1G079920.4
Wheat TraesCS2B02G340300 , TraesCS2A02G342600 , TraesCS2D02G320900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
2 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
3 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
4 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
5 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
6 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
7 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
8 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
9 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
10 Sobic.002G297300 expressed protein -
11 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
12 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
13 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
14 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
15 Sobic.007G116950 - -
16 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
17 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
18 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
19 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
20 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)


Gene co-expression network
sample Sobic006G264201 Sobic006G264201 Sobic002G329600 Sobic002G329600 Sobic006G264201--Sobic002G329600 Sobic002G339200 Sobic002G339200 Sobic006G264201--Sobic002G339200 Sobic004G238500 Sobic004G238500 Sobic006G264201--Sobic004G238500 Sobic009G234600 Sobic009G234600 Sobic006G264201--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic006G264201--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic006G264201--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic006G264201--Sobic001G078000 Sobic001G448400 Sobic001G448400 Sobic006G264201--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic006G264201--Sobic009G091800 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G030200 Sobic002G030200 Sobic002G329600--Sobic002G030200 Sobic002G329600--Sobic001G448400 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic006G234100 Sobic006G234100 Sobic002G339200--Sobic006G234100 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic010G109500 Sobic010G109500 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic004G238500--Sobic006G264201 Sobic008G051000 Sobic008G051000 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic007G116950 Sobic007G116950 Sobic004G238500--Sobic007G116950 Sobic003G132100 Sobic003G132100 Sobic004G238500--Sobic003G132100 Sobic001G382100 Sobic001G382100 Sobic004G238500--Sobic001G382100 Sobic004G238500--Sobic007G029300 Sobic009G234600--Sobic010G241000 Sobic006G264900 Sobic006G264900 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic009G234600--Sobic001G177000 Sobic009G234600--Sobic002G339200 Sobic009G234600--Sobic006G264201 Sobic010G000500 Sobic010G000500 Sobic009G234600--Sobic010G000500 Sobic001G046900 Sobic001G046900 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic007G029300--Sobic002G329600 Sobic007G029300--Sobic006G264201 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic007G029300--Sobic001G078000 Sobic007G029300--Sobic004G238500 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic003G052500 Sobic003G052500 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic001G078000--Sobic002G329600 Sobic006G105900 Sobic006G105900 Sobic001G078000--Sobic006G105900 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic001G078000--Sobic005G042000 Sobic001G078000--Sobic006G264201 Sobic001G078000--Sobic006G264900 Sobic001G078000--Sobic007G029300 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic004G343300 Sobic004G343300 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic009G091800--Sobic008G051000 Sobic002G288300 Sobic002G288300 Sobic009G091800--Sobic002G288300 Sobic004G234200 Sobic004G234200 Sobic009G091800--Sobic004G234200 Sobic009G091800--Sobic002G297300 Sobic010G022100 Sobic010G022100 Sobic009G091800--Sobic010G022100 Sobic009G091800--Sobic006G264201 Sobic009G091800--Sobic004G238500 Sobic009G091800--Sobic010G000500 Sobic009G091800--Sobic007G116950
Octagon: transcription factors


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