Gene annotation
Transcriptome id Sobic.006G105900.5,Sobic.006G105900.2,Sobic.006G105900.1,Sobic.006G105900.4,Sobic.006G105900.3,Sobic.006G105900.6
Synonym Sb06g018880, GAPA-2
Functional annotation Glyceraldehyde-3-phosphate dehydrogenase A (PubMedID : 26186930)
Glyceraldehyde-3-phosphate dehydrogenase (Zm) (PubMedID : 27208977)
Glyceraldehyde-3-phosphate dehydrogenase (Zm) (PubMedID : 27208977)
glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
UniProt A0A1B6PLB7 , A0A1B6PLC5 , A0A1B6PLD2 , A0A1B6PLB3 , A0A1B6PLC6
Pfam PF00044 PF02800
Panther DB PTHR10836 PTHR10836:SF38
NCBI CDD KOG0657; Glyceraldehyde 3-phosphate dehydrogenase
KEGG Orthology K05298; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G12900 : glyceraldehyde 3-phosphate dehydrogenase A subunit 2
RAP-DB (Rice) LOC_Os04g38600.2,LOC_Os04g38600.3,LOC_Os04g38600.1 : glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a011130 , Zm00025a056205 , Zm00025a000408
Brachypodium KQK23842 , KQK23841 , KQJ82963 , KQJ82962
Barley HORVU4Hr1G082700.6 , HORVU4Hr1G082700.5 , HORVU4Hr1G082700.4 , HORVU4Hr1G082700.3 , HORVU4Hr1G082700.2 , HORVU4Hr1G082700.1 , HORVU4Hr1G082700.9 , HORVU4Hr1G082700.7 , HORVU4Hr1G082700.10 , HORVU4Hr1G082700.8 , HORVU0Hr1G004830.3 , HORVU0Hr1G004830.2 , HORVU0Hr1G004830.1 , HORVU0Hr1G004830.7 , HORVU0Hr1G004830.6 , HORVU0Hr1G004830.5 , HORVU0Hr1G004830.4
Wheat TraesCS2A02G344600 , TraesCS5A02G495100 , TraesCS2B02G342200 , TraesCS2D02G322900 , TraesCS4B02G323000
Populus PNT04752 , PNT04753 , PNT04754 , PNT04755


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cDNA sequences
Sobic.006G105900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
2 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
3 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
4 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
5 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
6 Sobic.004G249800 expressed protein -
7 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
8 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
9 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
10 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
11 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
12 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
13 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
14 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
15 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
16 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
17 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
18 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
19 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
20 Sobic.010G109500 expressed protein -


Gene co-expression network
sample Sobic006G105900 Sobic006G105900 Sobic001G078000 Sobic001G078000 Sobic006G105900--Sobic001G078000 Sobic004G235200 Sobic004G235200 Sobic006G105900--Sobic004G235200 Sobic005G042000 Sobic005G042000 Sobic006G105900--Sobic005G042000 Sobic007G071500 Sobic007G071500 Sobic006G105900--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic006G105900--Sobic010G241000 Sobic004G249800 Sobic004G249800 Sobic006G105900--Sobic004G249800 Sobic003G052500 Sobic003G052500 Sobic006G105900--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic006G105900--Sobic004G343300 Sobic006G264900 Sobic006G264900 Sobic006G105900--Sobic006G264900 Sobic002G329600 Sobic002G329600 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic002G339200 Sobic002G339200 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic009G234600 Sobic009G234600 Sobic001G078000--Sobic009G234600 Sobic001G078000--Sobic005G042000 Sobic006G264201 Sobic006G264201 Sobic001G078000--Sobic006G264201 Sobic001G078000--Sobic006G264900 Sobic007G029300 Sobic007G029300 Sobic001G078000--Sobic007G029300 Sobic001G046900 Sobic001G046900 Sobic004G235200--Sobic001G046900 Sobic004G235200--Sobic005G042000 Sobic004G235200--Sobic006G105900 Sobic005G087000 Sobic005G087000 Sobic004G235200--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic002G033900 Sobic002G033900 Sobic004G235200--Sobic002G033900 Sobic010G189300 Sobic010G189300 Sobic004G235200--Sobic010G189300 Sobic004G235200--Sobic003G052500 Sobic005G042000--Sobic004G235200 Sobic005G042000--Sobic006G105900 Sobic005G042000--Sobic010G241000 Sobic005G042000--Sobic005G087000 Sobic005G042000--Sobic006G264900 Sobic005G042000--Sobic001G046900 Sobic010G000500 Sobic010G000500 Sobic005G042000--Sobic010G000500 Sobic005G042000--Sobic001G078000 Sobic005G042000--Sobic009G234600 Sobic009G143100 Sobic009G143100 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic007G071500--Sobic004G343300 Sobic002G316700 Sobic002G316700 Sobic007G071500--Sobic002G316700 Sobic008G134800 Sobic008G134800 Sobic007G071500--Sobic008G134800 Sobic004G035500 Sobic004G035500 Sobic007G071500--Sobic004G035500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic004G249800--Sobic004G343300 Sobic004G249800--Sobic006G105900 Sobic004G249800--Sobic007G071500 Sobic006G234100 Sobic006G234100 Sobic004G249800--Sobic006G234100 Sobic004G249800--Sobic004G035500 Sobic003G359100 Sobic003G359100 Sobic004G249800--Sobic003G359100 Sobic004G249800--Sobic008G134800 Sobic003G132100 Sobic003G132100 Sobic004G249800--Sobic003G132100 Sobic004G249800--Sobic005G042000 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic003G052500--Sobic003G209800 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic004G343300--Sobic004G249800 Sobic004G343300--Sobic003G132100 Sobic004G343300--Sobic006G105900 Sobic001G448400 Sobic001G448400 Sobic004G343300--Sobic001G448400 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic006G264900--Sobic009G234600 Sobic006G264900--Sobic010G000500 Sobic006G264900--Sobic006G105900 Sobic006G264900--Sobic010G241000 Sobic006G264900--Sobic005G042000 Sobic006G264900--Sobic002G329600 Sobic006G264900--Sobic001G046900 Sobic006G264900--Sobic001G078000 Sobic006G264900--Sobic001G177000
Octagon: transcription factors


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