Gene annotation
Transcriptome id Sobic.010G109500.1
Synonym Sb10g009560
Functional annotation expressed protein
UniProt C5Z843
Pfam PF14159
Panther DB PTHR33222 PTHR33222:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01150 : -
RAP-DB (Rice) LOC_Os06g15400.1 : expressed protein
MaizeGDB (Corn) Zm00025a000356 , Zm00025a042699
Brachypodium KQK18668 , KQK18667
Barley HORVU7Hr1G042160.5 , HORVU7Hr1G042160.6 , HORVU7Hr1G042160.7 , HORVU7Hr1G042160.3 , HORVU7Hr1G042160.8 , HORVU6Hr1G073100.9 , HORVU6Hr1G073100.8 , HORVU6Hr1G073100.3 , HORVU6Hr1G073100.2 , HORVU6Hr1G073100.1 , HORVU6Hr1G073100.7 , HORVU6Hr1G073100.6 , HORVU6Hr1G073100.5 , HORVU6Hr1G073100.4
Wheat TraesCS6A02G292800 , TraesCS6A02G292800 , TraesCS7B02G114100 , TraesCS7D02G209600 , TraesCS7D02G209600 , TraesCS7B02G114100 , TraesCS6D02G273900 , TraesCS6D02G273900 , TraesCS6B02G323200 , TraesCS6B02G323200 , TraesCS7A02G206700 , TraesCS7A02G206700
Populus -


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cDNA sequences
Sobic.010G109500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
2 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
3 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
5 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
6 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
7 Sobic.002G000500 isoflavone reductase, putative, expressed -
8 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
9 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
10 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.004G249800 expressed protein -
12 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
13 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
14 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
15 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
16 Sobic.002G180400 isochorismate synthase 1, chloroplast precursor, putative, expressed K02552: menaquinone-specific isochorismate synthase
17 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
18 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
19 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
20 Sobic.009G132900 PPDK(PubMedID : 19549309)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed K01006: pyruvate, orthophosphate dikinase


Gene co-expression network
sample Sobic010G109500 Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic010G109500--Sobic006G234100 Sobic001G448400 Sobic001G448400 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic003G209800 Sobic003G209800 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic002G339200 Sobic002G339200 Sobic010G109500--Sobic002G339200 Sobic002G000500 Sobic002G000500 Sobic010G109500--Sobic002G000500 Sobic003G052500 Sobic003G052500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic010G241000 Sobic010G241000 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic006G234100--Sobic002G329600 Sobic001G078000 Sobic001G078000 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic006G011100--Sobic010G109500 Sobic006G011100--Sobic002G000500 Sobic001G274600 Sobic001G274600 Sobic006G011100--Sobic001G274600 Sobic006G011100--Sobic003G209800 Sobic006G011100--Sobic006G234100 Sobic006G011100--Sobic003G052500 Sobic006G011100--Sobic002G339200 Sobic006G011100--Sobic001G448400 Sobic002G040100 Sobic002G040100 Sobic006G011100--Sobic002G040100 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic008G038300 Sobic008G038300 Sobic003G209800--Sobic008G038300 Sobic003G209800--Sobic006G234100 Sobic006G105900 Sobic006G105900 Sobic003G209800--Sobic006G105900 Sobic004G071800 Sobic004G071800 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500 Sobic010G276400--Sobic010G109500 Sobic003G199800 Sobic003G199800 Sobic010G276400--Sobic003G199800 Sobic010G276400--Sobic002G000500 Sobic010G276400--Sobic002G040100 Sobic010G276400--Sobic006G234100 Sobic001G068400 Sobic001G068400 Sobic010G276400--Sobic001G068400 Sobic010G276400--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic010G276400--Sobic007G171600 Sobic010G276400--Sobic003G209800 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic002G339200--Sobic006G234100 Sobic009G234600 Sobic009G234600 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic002G000500--Sobic002G040100 Sobic002G000500--Sobic006G011100 Sobic002G000500--Sobic010G109500 Sobic002G000500--Sobic010G276400 Sobic002G000500--Sobic003G199800 Sobic002G000500--Sobic008G038300 Sobic002G000500--Sobic007G171600 Sobic002G000500--Sobic003G209800 Sobic002G000500--Sobic001G274600 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800
Octagon: transcription factors


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