Gene annotation
Transcriptome id Sobic.002G180400.1
Synonym ATICS2, ICS2, Sb02g022920
Functional annotation isochorismate synthase 1, chloroplast precursor, putative, expressed
UniProt C5XAN2
Pfam PF00425
Panther DB PTHR11236 PTHR11236:SF3
NCBI CDD KOG1223; Isochorismate synthase
KEGG Orthology K02552; menaquinone-specific isochorismate synthase
Gene Ontology GO:0009058; biosynthetic process GO:0008909isochorismate synthase activity


Orthologs (automatic annotation)
TAIR AT1G18870 : isochorismate synthase 2
RAP-DB (Rice) LOC_Os09g19734.1 : isochorismate synthase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a046661
Brachypodium KQJ89950
Barley HORVU5Hr1G057050.25 , HORVU5Hr1G057050.24 , HORVU5Hr1G057050.23 , HORVU5Hr1G057050.22 , HORVU5Hr1G057050.21 , HORVU5Hr1G057050.20 , HORVU5Hr1G057050.4 , HORVU5Hr1G057050.5 , HORVU5Hr1G057050.6 , HORVU5Hr1G057050.7 , HORVU5Hr1G057050.1 , HORVU5Hr1G057050.2 , HORVU5Hr1G057050.3 , HORVU5Hr1G057050.8 , HORVU5Hr1G057050.9 , HORVU5Hr1G057050.16 , HORVU5Hr1G057050.17 , HORVU5Hr1G057050.14 , HORVU5Hr1G057050.15 , HORVU5Hr1G057050.12 , HORVU5Hr1G057050.13 , HORVU5Hr1G057050.10 , HORVU5Hr1G057050.11 , HORVU5Hr1G057050.18 , HORVU5Hr1G057050.19 , HORVU5Hr1G103490.4
Wheat TraesCS5B02G189100 , TraesCS5B02G189100 , TraesCS5B02G189100 , TraesCS5B02G189100 , TraesCS5A02G193800 , TraesCS5A02G193800 , TraesCS5A02G193800 , TraesCS5D02G196200 , TraesCS5D02G196200 , TraesCS5D02G196200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G109500 expressed protein -
2 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
3 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
4 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
5 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
6 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
7 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
8 Sobic.001G379700 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
9 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
10 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
12 Sobic.007G171600 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
13 Sobic.002G000500 isoflavone reductase, putative, expressed -
14 Sobic.004G249800 expressed protein -
15 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
16 Sobic.003G199800 expressed protein -
17 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
18 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
19 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
20 Sobic.003G359100 sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed K01100: sedoheptulose-bisphosphatase


Gene co-expression network
sample Sobic002G180400 Sobic002G180400 Sobic010G109500 Sobic010G109500 Sobic002G180400--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic002G180400--Sobic006G234100 Sobic004G023200 Sobic004G023200 Sobic002G180400--Sobic004G023200 Sobic004G343300 Sobic004G343300 Sobic002G180400--Sobic004G343300 Sobic001G448400 Sobic001G448400 Sobic002G180400--Sobic001G448400 Sobic010G276400 Sobic010G276400 Sobic002G180400--Sobic010G276400 Sobic003G209800 Sobic003G209800 Sobic002G180400--Sobic003G209800 Sobic001G379700 Sobic001G379700 Sobic002G180400--Sobic001G379700 Sobic003G052500 Sobic003G052500 Sobic002G180400--Sobic003G052500 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G109500--Sobic010G276400 Sobic002G339200 Sobic002G339200 Sobic010G109500--Sobic002G339200 Sobic002G000500 Sobic002G000500 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic010G109500--Sobic004G343300 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic010G241000 Sobic010G241000 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic006G234100--Sobic002G329600 Sobic001G078000 Sobic001G078000 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic002G033800 Sobic002G033800 Sobic004G023200--Sobic002G033800 Sobic004G023200--Sobic004G343300 Sobic006G103400 Sobic006G103400 Sobic004G023200--Sobic006G103400 Sobic004G023200--Sobic001G448400 Sobic004G249800 Sobic004G249800 Sobic004G023200--Sobic004G249800 Sobic004G023200--Sobic006G234100 Sobic004G023200--Sobic010G109500 Sobic003G132100 Sobic003G132100 Sobic004G023200--Sobic003G132100 Sobic004G035500 Sobic004G035500 Sobic004G023200--Sobic004G035500 Sobic004G343300--Sobic004G249800 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic004G343300--Sobic002G033800 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic010G276400--Sobic010G109500 Sobic003G199800 Sobic003G199800 Sobic010G276400--Sobic003G199800 Sobic010G276400--Sobic002G000500 Sobic002G040100 Sobic002G040100 Sobic010G276400--Sobic002G040100 Sobic010G276400--Sobic006G234100 Sobic001G068400 Sobic001G068400 Sobic010G276400--Sobic001G068400 Sobic008G038300 Sobic008G038300 Sobic010G276400--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic010G276400--Sobic007G171600 Sobic010G276400--Sobic003G209800 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic001G274600 Sobic001G274600 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic003G209800--Sobic006G234100 Sobic003G209800--Sobic006G105900 Sobic004G071800 Sobic004G071800 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500 Sobic001G379700--Sobic001G448400 Sobic001G379700--Sobic003G132100 Sobic003G197400 Sobic003G197400 Sobic001G379700--Sobic003G197400 Sobic001G379700--Sobic004G023200 Sobic001G379700--Sobic002G033800 Sobic001G379700--Sobic002G180400 Sobic001G527000 Sobic001G527000 Sobic001G379700--Sobic001G527000 Sobic001G379700--Sobic004G343300 Sobic009G091850 Sobic009G091850 Sobic001G379700--Sobic009G091850 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700
Octagon: transcription factors


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