Gene annotation
Transcriptome id Sobic.001G379700.1
Synonym Sb01g036030, HEME2
Functional annotation uroporphyrinogen decarboxylase, putative, expressed
UniProt C5X0S2
Pfam PF01208
Panther DB PTHR21091 PTHR21091:SF91
NCBI CDD -
KEGG Orthology K01599; hemE, uroporphyrinogen decarboxylase
Gene Ontology GO:0006779; porphyrin-containing compound biosynthetic process GO:0004853uroporphyrinogen decarboxylase activity


Orthologs (automatic annotation)
TAIR AT2G40490 : Uroporphyrinogen decarboxylase
RAP-DB (Rice) LOC_Os03g21900.1 : uroporphyrinogen decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a002362
Brachypodium KQK21785
Barley HORVU4Hr1G049410.2 , HORVU4Hr1G049410.3 , HORVU4Hr1G049410.1 , HORVU4Hr1G049410.4
Wheat TraesCS4A02G136400 , TraesCS4B02G168300 , TraesCS4D02G170800
Populus -


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cDNA sequences
Sobic.001G379700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
2 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
3 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
4 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
5 Sobic.002G033800 expressed protein -
6 Sobic.002G180400 isochorismate synthase 1, chloroplast precursor, putative, expressed K02552: menaquinone-specific isochorismate synthase
7 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
8 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
9 Sobic.009G091850 - -
10 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
11 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
12 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
13 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
14 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
15 Sobic.007G116950 - -
16 Sobic.002G152700 rhodanese-like, putative, expressed -
17 Sobic.001G464700 - -
18 Sobic.010G109500 expressed protein -
19 Sobic.007G212400 thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed -
20 Sobic.003G433900 expressed protein -


Gene co-expression network
sample Sobic001G379700 Sobic001G379700 Sobic001G448400 Sobic001G448400 Sobic001G379700--Sobic001G448400 Sobic003G132100 Sobic003G132100 Sobic001G379700--Sobic003G132100 Sobic003G197400 Sobic003G197400 Sobic001G379700--Sobic003G197400 Sobic004G023200 Sobic004G023200 Sobic001G379700--Sobic004G023200 Sobic002G033800 Sobic002G033800 Sobic001G379700--Sobic002G033800 Sobic002G180400 Sobic002G180400 Sobic001G379700--Sobic002G180400 Sobic001G527000 Sobic001G527000 Sobic001G379700--Sobic001G527000 Sobic004G343300 Sobic004G343300 Sobic001G379700--Sobic004G343300 Sobic009G091850 Sobic009G091850 Sobic001G379700--Sobic009G091850 Sobic006G234100 Sobic006G234100 Sobic001G448400--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic010G109500 Sobic010G109500 Sobic001G448400--Sobic010G109500 Sobic006G264201 Sobic006G264201 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic001G448400--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic001G448400--Sobic001G078000 Sobic003G132100--Sobic004G343300 Sobic008G051000 Sobic008G051000 Sobic003G132100--Sobic008G051000 Sobic003G132100--Sobic003G197400 Sobic003G132100--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic003G132100--Sobic004G238500 Sobic003G433900 Sobic003G433900 Sobic003G132100--Sobic003G433900 Sobic004G249800 Sobic004G249800 Sobic003G132100--Sobic004G249800 Sobic003G132100--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic003G132100--Sobic009G091800 Sobic001G041800 Sobic001G041800 Sobic003G197400--Sobic001G041800 Sobic003G197400--Sobic003G132100 Sobic003G197400--Sobic004G343300 Sobic006G222700 Sobic006G222700 Sobic003G197400--Sobic006G222700 Sobic006G103400 Sobic006G103400 Sobic003G197400--Sobic006G103400 Sobic003G197400--Sobic007G029300 Sobic004G175500 Sobic004G175500 Sobic003G197400--Sobic004G175500 Sobic003G197400--Sobic001G448400 Sobic003G197400--Sobic002G033800 Sobic004G023200--Sobic002G033800 Sobic004G023200--Sobic004G343300 Sobic004G023200--Sobic006G103400 Sobic004G023200--Sobic001G448400 Sobic004G023200--Sobic004G249800 Sobic004G023200--Sobic006G234100 Sobic004G023200--Sobic010G109500 Sobic004G023200--Sobic003G132100 Sobic004G035500 Sobic004G035500 Sobic004G023200--Sobic004G035500 Sobic002G033800--Sobic004G343300 Sobic002G033800--Sobic003G132100 Sobic002G033800--Sobic004G023200 Sobic007G071500 Sobic007G071500 Sobic002G033800--Sobic007G071500 Sobic002G152700 Sobic002G152700 Sobic002G033800--Sobic002G152700 Sobic002G033800--Sobic006G103400 Sobic002G033800--Sobic004G175500 Sobic002G033800--Sobic001G448400 Sobic001G029100 Sobic001G029100 Sobic002G033800--Sobic001G029100 Sobic002G180400--Sobic010G109500 Sobic002G180400--Sobic006G234100 Sobic002G180400--Sobic004G023200 Sobic002G180400--Sobic004G343300 Sobic002G180400--Sobic001G448400 Sobic010G276400 Sobic010G276400 Sobic002G180400--Sobic010G276400 Sobic003G209800 Sobic003G209800 Sobic002G180400--Sobic003G209800 Sobic002G180400--Sobic001G379700 Sobic003G052500 Sobic003G052500 Sobic002G180400--Sobic003G052500 Sobic001G527000--Sobic009G091850 Sobic007G004600 Sobic007G004600 Sobic001G527000--Sobic007G004600 Sobic001G527000--Sobic002G152700 Sobic001G415400 Sobic001G415400 Sobic001G527000--Sobic001G415400 Sobic005G123200 Sobic005G123200 Sobic001G527000--Sobic005G123200 Sobic010G277600 Sobic010G277600 Sobic001G527000--Sobic010G277600 Sobic009G183700 Sobic009G183700 Sobic001G527000--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic001G527000--Sobic009G030900 Sobic007G143700 Sobic007G143700 Sobic001G527000--Sobic007G143700 Sobic004G343300--Sobic004G249800 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G343300--Sobic004G175500 Sobic004G343300--Sobic002G033800 Sobic007G116950 Sobic007G116950 Sobic009G091850--Sobic007G116950 Sobic009G091850--Sobic001G527000 Sobic009G091850--Sobic008G051000 Sobic010G255600 Sobic010G255600 Sobic009G091850--Sobic010G255600 Sobic009G091850--Sobic003G132100 Sobic009G091850--Sobic003G433900 Sobic001G382100 Sobic001G382100 Sobic009G091850--Sobic001G382100 Sobic009G091850--Sobic007G004600 Sobic009G091850--Sobic009G091800
Octagon: transcription factors


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