Gene annotation
Transcriptome id Sobic.001G464700.1
Synonym
Functional annotation -
UniProt A0A1B6QPR6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
2 Sobic.004G036100 SAM dependent carboxyl methyltransferase, putative, expressed -
3 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
4 Sobic.003G099400 cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
5 Sobic.007G116950 - -
6 Sobic.009G091850 - -
7 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
8 Sobic.001G192100 "Belongs to the cytochrome P450 family, up-regulated under all the stress condition"(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Belongs to the cytochrome P450 family(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed -
9 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
10 Sobic.001G379700 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
11 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
12 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
13 Sobic.003G120500 transmembrane protein 136, putative, expressed -
14 Sobic.003G157400 TPR repeat, putative, expressed -
15 Sobic.003G069200 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
16 Sobic.004G114800 expressed protein -
17 Sobic.003G338801 - -
18 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -
19 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
20 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase


Gene co-expression network
sample Sobic001G464700 Sobic001G464700 Sobic010G255600 Sobic010G255600 Sobic001G464700--Sobic010G255600 Sobic004G036100 Sobic004G036100 Sobic001G464700--Sobic004G036100 Sobic001G382100 Sobic001G382100 Sobic001G464700--Sobic001G382100 Sobic003G099400 Sobic003G099400 Sobic001G464700--Sobic003G099400 Sobic007G116950 Sobic007G116950 Sobic001G464700--Sobic007G116950 Sobic009G091850 Sobic009G091850 Sobic001G464700--Sobic009G091850 Sobic001G203000 Sobic001G203000 Sobic001G464700--Sobic001G203000 Sobic001G192100 Sobic001G192100 Sobic001G464700--Sobic001G192100 Sobic008G051000 Sobic008G051000 Sobic001G464700--Sobic008G051000 Sobic010G255600--Sobic001G382100 Sobic010G255600--Sobic001G203000 Sobic010G255600--Sobic009G091850 Sobic010G255600--Sobic008G051000 Sobic010G255600--Sobic004G036100 Sobic007G185100 Sobic007G185100 Sobic010G255600--Sobic007G185100 Sobic004G054500 Sobic004G054500 Sobic010G255600--Sobic004G054500 Sobic010G255600--Sobic003G099400 Sobic010G255600--Sobic007G116950 Sobic004G036100--Sobic010G255600 Sobic003G120500 Sobic003G120500 Sobic004G036100--Sobic003G120500 Sobic003G157400 Sobic003G157400 Sobic004G036100--Sobic003G157400 Sobic004G036100--Sobic001G464700 Sobic003G069200 Sobic003G069200 Sobic004G036100--Sobic003G069200 Sobic004G036100--Sobic007G185100 Sobic004G036100--Sobic004G054500 Sobic004G044200 Sobic004G044200 Sobic004G036100--Sobic004G044200 Sobic006G145500 Sobic006G145500 Sobic004G036100--Sobic006G145500 Sobic001G382100--Sobic010G255600 Sobic001G382100--Sobic003G099400 Sobic004G238500 Sobic004G238500 Sobic001G382100--Sobic004G238500 Sobic001G382100--Sobic008G051000 Sobic001G382100--Sobic001G203000 Sobic001G382100--Sobic009G091850 Sobic001G382100--Sobic007G116950 Sobic004G114800 Sobic004G114800 Sobic001G382100--Sobic004G114800 Sobic006G100900 Sobic006G100900 Sobic001G382100--Sobic006G100900 Sobic003G099400--Sobic001G382100 Sobic003G099400--Sobic007G116950 Sobic003G099400--Sobic004G238500 Sobic003G099400--Sobic008G051000 Sobic007G029300 Sobic007G029300 Sobic003G099400--Sobic007G029300 Sobic003G099400--Sobic010G255600 Sobic003G099400--Sobic009G091850 Sobic006G264201 Sobic006G264201 Sobic003G099400--Sobic006G264201 Sobic003G099400--Sobic001G203000 Sobic007G116950--Sobic008G051000 Sobic007G116950--Sobic009G091850 Sobic007G116950--Sobic001G203000 Sobic007G116950--Sobic006G264201 Sobic007G116950--Sobic004G238500 Sobic007G116950--Sobic003G099400 Sobic009G091800 Sobic009G091800 Sobic007G116950--Sobic009G091800 Sobic007G116950--Sobic004G114800 Sobic007G116950--Sobic001G382100 Sobic009G091850--Sobic007G116950 Sobic001G527000 Sobic001G527000 Sobic009G091850--Sobic001G527000 Sobic009G091850--Sobic008G051000 Sobic009G091850--Sobic010G255600 Sobic003G132100 Sobic003G132100 Sobic009G091850--Sobic003G132100 Sobic003G433900 Sobic003G433900 Sobic009G091850--Sobic003G433900 Sobic009G091850--Sobic001G382100 Sobic007G004600 Sobic007G004600 Sobic009G091850--Sobic007G004600 Sobic009G091850--Sobic009G091800 Sobic001G203000--Sobic008G051000 Sobic001G203000--Sobic004G114800 Sobic001G203000--Sobic007G116950 Sobic001G203000--Sobic004G054500 Sobic001G203000--Sobic010G255600 Sobic004G234200 Sobic004G234200 Sobic001G203000--Sobic004G234200 Sobic001G203000--Sobic001G382100 Sobic001G203000--Sobic009G091800 Sobic001G203000--Sobic004G238500 Sobic003G057900 Sobic003G057900 Sobic001G192100--Sobic003G057900 Sobic010G006350 Sobic010G006350 Sobic001G192100--Sobic010G006350 Sobic001G192100--Sobic001G464700 Sobic001G192100--Sobic010G255600 Sobic010G094301 Sobic010G094301 Sobic001G192100--Sobic010G094301 Sobic001G192100--Sobic003G099400 Sobic001G192100--Sobic003G132100 Sobic001G192100--Sobic009G091850 Sobic009G132900 Sobic009G132900 Sobic001G192100--Sobic009G132900 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic008G051000--Sobic009G091850 Sobic008G051000--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic008G051000--Sobic002G297300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.