Gene annotation
| Transcriptome id | Sobic.003G099400.1 |
|---|---|
| Synonym | Sb03g008330 |
| Functional annotation | cyclophilin-type (PubMedID : 29017446) peptidyl-prolyl cis-trans isomerase, putative, expressed |
| UniProt | C5XEW1 |
| Pfam | PF00160 |
| Panther DB | PTHR11071 PTHR11071:SF244 |
| NCBI CDD | KOG0879; U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase |
| KEGG Orthology | K03768; PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| Gene Ontology | GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization |
Orthologs (automatic annotation)
| TAIR | AT1G74070 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g02080.1 : peptidyl-prolyl cis-trans isomerase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a035442 |
| Brachypodium | KQK02348 |
| Barley | HORVU3Hr1G000900.1 , HORVU3Hr1G000900.2 , HORVU3Hr1G000900.3 |
| Wheat | TraesCS3A02G005900 , TraesCS3D02G004600 , TraesCS3B02G008100 |
| Populus | - |
JBrowse
| Sobic.003G099400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 2 | Sobic.007G116950 | - | - |
| 3 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 4 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 5 | Sobic.007G029300 | acyl-activating enzyme 14, putative, expressed | K14760: acyl-activating enzyme 14 |
| 6 | Sobic.010G255600 | thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed | - |
| 7 | Sobic.009G091850 | - | - |
| 8 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 9 | Sobic.001G203000 | thylakoid lumenal protein, putative, expressed | - |
| 10 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 11 | Sobic.002G339200 | Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08914: light-harvesting complex II chlorophyll a/b binding protein 3 |
| 12 | Sobic.002G329600 | Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed | K08901: photosystem II oxygen-evolving enhancer protein 3 |
| 13 | Sobic.001G464700 | - | - |
| 14 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 15 | Sobic.007G212400 | thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed | - |
| 16 | Sobic.004G114800 | expressed protein | - |
| 17 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 18 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 19 | Sobic.002G297300 | expressed protein | - |
| 20 | Sobic.002G264800 | unknown(PubMedID : 29017446)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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