Gene annotation
Transcriptome id Sobic.001G382100.1
Synonym Sb01g036240, PSB27,
Functional annotation Photosystem II repair protein PSB27-H1 (PubMedID : 26186930)
Photosystem II 11 kD protein (Os) (PubMedID : 27208977)
photosystem II 11 kD protein, putative, expressed
UniProt C5X0U5
Pfam PF13326
Panther DB PTHR34041 PTHR34041:SF1
NCBI CDD -
KEGG Orthology K08902; photosystem II Psb27 protein
Gene Ontology GO:0010207; photosystem II assembly


Orthologs (automatic annotation)
TAIR AT1G03600 : photosystem II family protein
RAP-DB (Rice) LOC_Os03g21560.1 : photosystem II 11 kD protein, putative, expressed
MaizeGDB (Corn) Zm00025a002338 , Zm00025a052443
Brachypodium KQK21816
Barley HORVU4Hr1G050630.9
Wheat -
Populus -


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cDNA sequences
Sobic.001G382100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
2 Sobic.003G099400 cyclophilin-type(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
3 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
4 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
5 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
6 Sobic.009G091850 - -
7 Sobic.007G116950 - -
8 Sobic.004G114800 expressed protein -
9 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -
10 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
11 Sobic.007G212400 thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed -
12 Sobic.003G433900 expressed protein -
13 Sobic.002G297300 expressed protein -
14 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
15 Sobic.009G179800 - -
16 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
17 Sobic.002G264800 unknown(PubMedID : 29017446)@expressed protein -
18 Sobic.001G464700 - -
19 Sobic.004G054500 porphobilinogen deaminase, chloroplast precursor, putative, expressed K01749: hemC, hydroxymethylbilane synthase
20 Sobic.003G239300 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G382100 Sobic001G382100 Sobic010G255600 Sobic010G255600 Sobic001G382100--Sobic010G255600 Sobic003G099400 Sobic003G099400 Sobic001G382100--Sobic003G099400 Sobic004G238500 Sobic004G238500 Sobic001G382100--Sobic004G238500 Sobic008G051000 Sobic008G051000 Sobic001G382100--Sobic008G051000 Sobic001G203000 Sobic001G203000 Sobic001G382100--Sobic001G203000 Sobic009G091850 Sobic009G091850 Sobic001G382100--Sobic009G091850 Sobic007G116950 Sobic007G116950 Sobic001G382100--Sobic007G116950 Sobic004G114800 Sobic004G114800 Sobic001G382100--Sobic004G114800 Sobic006G100900 Sobic006G100900 Sobic001G382100--Sobic006G100900 Sobic010G255600--Sobic001G382100 Sobic010G255600--Sobic001G203000 Sobic010G255600--Sobic009G091850 Sobic010G255600--Sobic008G051000 Sobic004G036100 Sobic004G036100 Sobic010G255600--Sobic004G036100 Sobic007G185100 Sobic007G185100 Sobic010G255600--Sobic007G185100 Sobic004G054500 Sobic004G054500 Sobic010G255600--Sobic004G054500 Sobic010G255600--Sobic003G099400 Sobic010G255600--Sobic007G116950 Sobic003G099400--Sobic001G382100 Sobic003G099400--Sobic007G116950 Sobic003G099400--Sobic004G238500 Sobic003G099400--Sobic008G051000 Sobic007G029300 Sobic007G029300 Sobic003G099400--Sobic007G029300 Sobic003G099400--Sobic010G255600 Sobic003G099400--Sobic009G091850 Sobic006G264201 Sobic006G264201 Sobic003G099400--Sobic006G264201 Sobic003G099400--Sobic001G203000 Sobic004G238500--Sobic006G264201 Sobic004G238500--Sobic008G051000 Sobic002G297300 Sobic002G297300 Sobic004G238500--Sobic002G297300 Sobic002G329600 Sobic002G329600 Sobic004G238500--Sobic002G329600 Sobic009G091800 Sobic009G091800 Sobic004G238500--Sobic009G091800 Sobic004G238500--Sobic007G116950 Sobic003G132100 Sobic003G132100 Sobic004G238500--Sobic003G132100 Sobic004G238500--Sobic001G382100 Sobic004G238500--Sobic007G029300 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic008G051000--Sobic001G203000 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic008G051000--Sobic009G091850 Sobic004G234200 Sobic004G234200 Sobic008G051000--Sobic004G234200 Sobic008G051000--Sobic002G297300 Sobic001G203000--Sobic008G051000 Sobic001G203000--Sobic004G114800 Sobic001G203000--Sobic007G116950 Sobic001G203000--Sobic004G054500 Sobic001G203000--Sobic010G255600 Sobic001G203000--Sobic004G234200 Sobic001G203000--Sobic001G382100 Sobic001G203000--Sobic009G091800 Sobic001G203000--Sobic004G238500 Sobic009G091850--Sobic007G116950 Sobic001G527000 Sobic001G527000 Sobic009G091850--Sobic001G527000 Sobic009G091850--Sobic008G051000 Sobic009G091850--Sobic010G255600 Sobic009G091850--Sobic003G132100 Sobic003G433900 Sobic003G433900 Sobic009G091850--Sobic003G433900 Sobic009G091850--Sobic001G382100 Sobic007G004600 Sobic007G004600 Sobic009G091850--Sobic007G004600 Sobic009G091850--Sobic009G091800 Sobic007G116950--Sobic008G051000 Sobic007G116950--Sobic009G091850 Sobic007G116950--Sobic001G203000 Sobic007G116950--Sobic006G264201 Sobic007G116950--Sobic004G238500 Sobic007G116950--Sobic003G099400 Sobic007G116950--Sobic009G091800 Sobic007G116950--Sobic004G114800 Sobic007G116950--Sobic001G382100 Sobic004G114800--Sobic001G203000 Sobic004G114800--Sobic004G234200 Sobic004G114800--Sobic006G100900 Sobic004G114800--Sobic008G051000 Sobic004G114800--Sobic009G091800 Sobic004G114800--Sobic007G116950 Sobic004G114800--Sobic001G382100 Sobic002G328900 Sobic002G328900 Sobic004G114800--Sobic002G328900 Sobic004G114800--Sobic004G238500 Sobic006G100900--Sobic004G114800 Sobic006G100900--Sobic001G203000 Sobic006G100900--Sobic001G382100 Sobic006G100900--Sobic004G234200 Sobic006G100900--Sobic008G051000 Sobic006G100900--Sobic009G091800 Sobic006G100900--Sobic004G238500 Sobic006G100900--Sobic007G116950 Sobic006G100900--Sobic002G297300
Octagon: transcription factors


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