Gene annotation
Transcriptome id Sobic.002G297300.1
Synonym PSAP, PTAC8, PSI-P, TMP14
Functional annotation expressed protein
UniProt C5X7U1
Pfam PF14159
Panther DB PTHR33222:SF9 PTHR33222
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46820 : photosystem I P subunit
RAP-DB (Rice) LOC_Os07g28610.2 : expressed protein
MaizeGDB (Corn) Zm00025a047869
Brachypodium KQK16346
Barley -
Wheat TraesCS2A02G235000 , TraesCS2A02G235000 , TraesCS2D02G238700 , TraesCS2B02G256300 , TraesCS2B02G256300
Populus -


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cDNA sequences
Sobic.002G297300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
2 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
3 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
4 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
5 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
6 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
7 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
8 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
9 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
10 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
11 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
12 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
13 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
14 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
16 Sobic.007G116950 - -
17 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
18 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
19 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
20 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2


Gene co-expression network
sample Sobic002G297300 Sobic002G297300 Sobic009G091800 Sobic009G091800 Sobic002G297300--Sobic009G091800 Sobic002G329600 Sobic002G329600 Sobic002G297300--Sobic002G329600 Sobic004G234200 Sobic004G234200 Sobic002G297300--Sobic004G234200 Sobic009G130700 Sobic009G130700 Sobic002G297300--Sobic009G130700 Sobic002G030200 Sobic002G030200 Sobic002G297300--Sobic002G030200 Sobic006G264201 Sobic006G264201 Sobic002G297300--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic002G297300--Sobic004G238500 Sobic010G000500 Sobic010G000500 Sobic002G297300--Sobic010G000500 Sobic008G051000 Sobic008G051000 Sobic002G297300--Sobic008G051000 Sobic009G091800--Sobic008G051000 Sobic002G288300 Sobic002G288300 Sobic009G091800--Sobic002G288300 Sobic009G091800--Sobic004G234200 Sobic009G091800--Sobic002G297300 Sobic010G022100 Sobic010G022100 Sobic009G091800--Sobic010G022100 Sobic009G091800--Sobic006G264201 Sobic009G091800--Sobic004G238500 Sobic009G091800--Sobic010G000500 Sobic007G116950 Sobic007G116950 Sobic009G091800--Sobic007G116950 Sobic002G329600--Sobic006G264201 Sobic002G339200 Sobic002G339200 Sobic002G329600--Sobic002G339200 Sobic001G078000 Sobic001G078000 Sobic002G329600--Sobic001G078000 Sobic010G241000 Sobic010G241000 Sobic002G329600--Sobic010G241000 Sobic009G234600 Sobic009G234600 Sobic002G329600--Sobic009G234600 Sobic007G029300 Sobic007G029300 Sobic002G329600--Sobic007G029300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic001G448400 Sobic001G448400 Sobic002G329600--Sobic001G448400 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G193400 Sobic004G193400 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic004G234200--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic009G130700--Sobic002G297300 Sobic009G179800 Sobic009G179800 Sobic009G130700--Sobic009G179800 Sobic003G433900 Sobic003G433900 Sobic009G130700--Sobic003G433900 Sobic009G130700--Sobic009G091800 Sobic003G246400 Sobic003G246400 Sobic009G130700--Sobic003G246400 Sobic001G382100 Sobic001G382100 Sobic009G130700--Sobic001G382100 Sobic009G130700--Sobic004G238500 Sobic009G130700--Sobic010G022100 Sobic009G130700--Sobic002G329600 Sobic002G030200--Sobic010G000500 Sobic001G177000 Sobic001G177000 Sobic002G030200--Sobic001G177000 Sobic002G338000 Sobic002G338000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic001G046900 Sobic001G046900 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic006G264201--Sobic002G329600 Sobic006G264201--Sobic002G339200 Sobic006G264201--Sobic004G238500 Sobic006G264201--Sobic009G234600 Sobic006G264201--Sobic007G029300 Sobic006G264201--Sobic010G241000 Sobic006G264201--Sobic001G078000 Sobic006G264201--Sobic001G448400 Sobic006G264201--Sobic009G091800 Sobic004G238500--Sobic006G264201 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic004G238500--Sobic007G116950 Sobic003G132100 Sobic003G132100 Sobic004G238500--Sobic003G132100 Sobic004G238500--Sobic001G382100 Sobic004G238500--Sobic007G029300 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic001G203000 Sobic001G203000 Sobic008G051000--Sobic001G203000 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic009G091850 Sobic009G091850 Sobic008G051000--Sobic009G091850 Sobic008G051000--Sobic004G234200 Sobic008G051000--Sobic002G297300
Octagon: transcription factors


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