Gene annotation
| Transcriptome id | Sobic.004G193400.1 |
|---|---|
| Synonym | Sb04g024130 |
| Functional annotation | photosystem II 5 kDa protein, chloroplast precursor, putative, expressed |
| UniProt | A0A194YQK0 |
| Pfam | - |
| Panther DB | PTHR34940 PTHR34940:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G51400 : Photosystem II 5 kD protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g37060.1 : photosystem II 5 kDa protein, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a020859 |
| Brachypodium | KQK00056 |
| Barley | HORVU6Hr1G015770.1 , HORVU6Hr1G015770.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G193400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G234200 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | K01802: peptidylprolyl isomerase |
| 2 | Sobic.002G414400 | -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed | - |
| 3 | Sobic.002G297300 | expressed protein | - |
| 4 | Sobic.007G023300 | photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed | K02723: photosystem II PsbY protein |
| 5 | Sobic.009G091800 | -(PubMedID : 29017446)@PTAC16, putative, expressed | - |
| 6 | Sobic.002G288300 | Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 7 | Sobic.010G022100 | magnesium-protoporphyrin O-methyltransferase, putative, expressed | K03428: bchM, magnesium-protoporphyrin O-methyltransferase |
| 8 | Sobic.008G117400 | OsGrx_C11 - glutaredoxin subgroup III, expressed | K03676: grxC, GLRX, glutaredoxin 3 |
| 9 | Sobic.002G030200 | Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed | K02717: photosystem II oxygen-evolving enhancer protein 2 |
| 10 | Sobic.001G206200 | oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed | K00218: protochlorophyllide reductase |
| 11 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 12 | Sobic.010G000500 | Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed | K02638: plastocyanin |
| 13 | Sobic.002G338000 | Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08915: light-harvesting complex II chlorophyll a/b binding protein 4 |
| 14 | Sobic.004G114800 | expressed protein | - |
| 15 | Sobic.002G328900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 16 | Sobic.003G328200 | thylakoid lumenal 20 kDa protein, putative, expressed | - |
| 17 | Sobic.008G063500 | Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed | K02701: photosystem I subunit PsaN |
| 18 | Sobic.002G383400 | Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed | - |
| 19 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
| 20 | Sobic.003G300500 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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