Gene annotation
Transcriptome id Sobic.008G117400.1
Synonym
Functional annotation OsGrx_C11 - glutaredoxin subgroup III, expressed
UniProt C5YPD0 , C6JSU9
Pfam PF00462
Panther DB PTHR10168:SF83 PTHR10168
NCBI CDD KOG1752; Glutaredoxin and related proteins
KEGG Orthology K03676; grxC, GLRX, glutaredoxin 3
Gene Ontology GO:0009055; electron transfer activity GO:0015035protein disulfide oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT2G47870 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os12g35340.1 : OsGrx_C11 - glutaredoxin subgroup III, expressed
MaizeGDB (Corn) Zm00025a024551 , Zm00025a024553 , Zm00025a054354 , Zm00025a054358
Brachypodium KQK04322 , KQK11419 , KQJ86457 , KQJ86460
Barley HORVU3Hr1G099050.1 , HORVU3Hr1G099050.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
2 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
3 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
4 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
5 Sobic.002G297300 expressed protein -
6 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
7 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
8 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
9 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
10 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
11 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
12 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
13 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
14 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
15 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
16 Sobic.004G068300 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
17 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
18 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
19 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
20 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1


Gene co-expression network
sample Sobic008G117400 Sobic008G117400 Sobic004G234200 Sobic004G234200 Sobic008G117400--Sobic004G234200 Sobic004G193400 Sobic004G193400 Sobic008G117400--Sobic004G193400 Sobic002G030200 Sobic002G030200 Sobic008G117400--Sobic002G030200 Sobic001G206200 Sobic001G206200 Sobic008G117400--Sobic001G206200 Sobic002G297300 Sobic002G297300 Sobic008G117400--Sobic002G297300 Sobic008G063500 Sobic008G063500 Sobic008G117400--Sobic008G063500 Sobic002G338000 Sobic002G338000 Sobic008G117400--Sobic002G338000 Sobic002G414400 Sobic002G414400 Sobic008G117400--Sobic002G414400 Sobic010G000500 Sobic010G000500 Sobic008G117400--Sobic010G000500 Sobic009G091800 Sobic009G091800 Sobic004G234200--Sobic009G091800 Sobic010G022100 Sobic010G022100 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic002G288300 Sobic002G288300 Sobic004G234200--Sobic002G288300 Sobic008G051000 Sobic008G051000 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic004G193400--Sobic002G297300 Sobic007G023300 Sobic007G023300 Sobic004G193400--Sobic007G023300 Sobic004G193400--Sobic009G091800 Sobic004G193400--Sobic002G288300 Sobic004G193400--Sobic010G022100 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200 Sobic002G030200--Sobic010G000500 Sobic001G177000 Sobic001G177000 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic002G030200--Sobic008G063500 Sobic001G046900 Sobic001G046900 Sobic002G030200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G030200--Sobic002G329600 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic001G206200--Sobic002G329600 Sobic002G297300--Sobic009G091800 Sobic002G297300--Sobic002G329600 Sobic002G297300--Sobic004G234200 Sobic009G130700 Sobic009G130700 Sobic002G297300--Sobic009G130700 Sobic002G297300--Sobic002G030200 Sobic006G264201 Sobic006G264201 Sobic002G297300--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic002G297300--Sobic004G238500 Sobic002G297300--Sobic010G000500 Sobic002G297300--Sobic008G051000 Sobic008G063500--Sobic001G177000 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic007G136900 Sobic007G136900 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic004G056900 Sobic004G056900 Sobic008G063500--Sobic004G056900 Sobic008G063500--Sobic001G046900 Sobic002G316700 Sobic002G316700 Sobic008G063500--Sobic002G316700 Sobic008G063500--Sobic002G338000 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G414400--Sobic002G297300 Sobic002G414400--Sobic002G288300 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000
Octagon: transcription factors


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