Gene annotation
Transcriptome id Sobic.004G068300.1
Synonym 1, ATAVP3, AtVHP1, AVP-3, Sb04g005710, AVP1
Functional annotation inorganic H+ pyrophosphatase, putative, expressed
UniProt C5XWX8 , B8QN53
Pfam PF03030
Panther DB PTHR31998 PTHR31998:SF10
NCBI CDD -
KEGG Orthology K01507; inorganic pyrophosphatase
Gene Ontology GO:0016020; membrane GO:0009678pyrophosphate hydrolysis-driven proton transmembrane transporter activity GO:0004427inorganic diphosphatase activity


Orthologs (automatic annotation)
TAIR AT1G15690 : Inorganic H pyrophosphatase family protein
RAP-DB (Rice) LOC_Os02g09150.1 : inorganic H+ pyrophosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a051395 , Zm00025a042963 , Zm00025a049815 , Zm00025a048398 , Zm00025a042870 , Zm00025a025158 , Zm00025a025159 , Zm00025a034722 , Zm00025a019304
Brachypodium KQK19346 , KQK16780
Barley HORVU7Hr1G115540.11 , HORVU7Hr1G115540.10 , HORVU7Hr1G115540.5 , HORVU7Hr1G115540.4 , HORVU7Hr1G115540.7 , HORVU7Hr1G115540.6 , HORVU7Hr1G115540.1 , HORVU7Hr1G115540.3 , HORVU7Hr1G115540.2 , HORVU7Hr1G115540.9 , HORVU7Hr1G115540.8 , HORVU0Hr1G028950.8 , HORVU0Hr1G028950.4 , HORVU0Hr1G028950.5 , HORVU0Hr1G028950.2 , HORVU0Hr1G028950.3 , HORVU0Hr1G028950.1 , HORVU0Hr1G028950.10 , HORVU0Hr1G028950.11 , HORVU0Hr1G028950.9 , HORVU0Hr1G032540.1 , HORVU7Hr1G031480.1 , HORVU0Hr1G032540.2 , HORVU0Hr1G032070.2 , HORVU0Hr1G032070.3 , HORVU7Hr1G114250.2 , HORVU7Hr1G114250.3 , HORVU7Hr1G114250.1 , HORVU7Hr1G114250.4 , HORVU0Hr1G028950.6 , HORVU0Hr1G032070.4 , HORVU0Hr1G032070.1 , HORVU5Hr1G076290.3 , HORVU5Hr1G076290.2 , HORVU5Hr1G076290.1 , HORVU0Hr1G028950.7 , HORVU4Hr1G033720.1 , HORVU4Hr1G033720.3 , HORVU4Hr1G033720.2 , HORVU4Hr1G033720.4
Wheat TraesCS7A02G141300 , TraesCS7D02G142600 , TraesCS7A02G141300 , TraesCS7D02G142600 , TraesCS7A02G517700 , TraesCS7A02G517700 , TraesCS7B02G433800 , TraesCS7A02G141300 , TraesCS7D02G142600 , TraesCS7B02G042600 , TraesCS7B02G042600 , TraesCS7D02G507600
Populus -


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cDNA sequences
Sobic.004G068300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
2 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
3 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
4 Sobic.001G531200 methylthioribose kinase, putative, expressed -
5 Sobic.008G117400 OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
6 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.006G222700 OsCHL Chloroplastic lipocalin, expressed -
8 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
9 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
10 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
11 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
12 Sobic.006G248200 - -
13 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
14 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
15 Sobic.002G297300 expressed protein -
16 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
17 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
18 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
19 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
20 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase


Gene co-expression network
sample Sobic004G068300 Sobic004G068300 Sobic004G234200 Sobic004G234200 Sobic004G068300--Sobic004G234200 Sobic001G041800 Sobic001G041800 Sobic004G068300--Sobic001G041800 Sobic002G030200 Sobic002G030200 Sobic004G068300--Sobic002G030200 Sobic001G531200 Sobic001G531200 Sobic004G068300--Sobic001G531200 Sobic008G117400 Sobic008G117400 Sobic004G068300--Sobic008G117400 Sobic003G030900 Sobic003G030900 Sobic004G068300--Sobic003G030900 Sobic006G222700 Sobic006G222700 Sobic004G068300--Sobic006G222700 Sobic010G022100 Sobic010G022100 Sobic004G068300--Sobic010G022100 Sobic001G206200 Sobic001G206200 Sobic004G068300--Sobic001G206200 Sobic009G091800 Sobic009G091800 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic002G297300 Sobic002G297300 Sobic004G234200--Sobic002G297300 Sobic004G193400 Sobic004G193400 Sobic004G234200--Sobic004G193400 Sobic002G288300 Sobic002G288300 Sobic004G234200--Sobic002G288300 Sobic008G051000 Sobic008G051000 Sobic004G234200--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic004G234200--Sobic002G414400 Sobic010G000500 Sobic010G000500 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic003G197400 Sobic003G197400 Sobic001G041800--Sobic003G197400 Sobic004G175500 Sobic004G175500 Sobic001G041800--Sobic004G175500 Sobic001G041800--Sobic006G222700 Sobic003G132100 Sobic003G132100 Sobic001G041800--Sobic003G132100 Sobic006G103400 Sobic006G103400 Sobic001G041800--Sobic006G103400 Sobic004G343300 Sobic004G343300 Sobic001G041800--Sobic004G343300 Sobic002G198600 Sobic002G198600 Sobic001G041800--Sobic002G198600 Sobic001G415400 Sobic001G415400 Sobic001G041800--Sobic001G415400 Sobic001G041800--Sobic004G068300 Sobic002G030200--Sobic010G000500 Sobic001G177000 Sobic001G177000 Sobic002G030200--Sobic001G177000 Sobic002G338000 Sobic002G338000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic001G046900 Sobic001G046900 Sobic002G030200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G030200--Sobic002G329600 Sobic006G248200 Sobic006G248200 Sobic001G531200--Sobic006G248200 Sobic003G386300 Sobic003G386300 Sobic001G531200--Sobic003G386300 Sobic001G240000 Sobic001G240000 Sobic001G531200--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic001G531200--Sobic001G527100 Sobic001G475600 Sobic001G475600 Sobic001G531200--Sobic001G475600 Sobic001G333000 Sobic001G333000 Sobic001G531200--Sobic001G333000 Sobic001G040000 Sobic001G040000 Sobic001G531200--Sobic001G040000 Sobic001G531200--Sobic002G198600 Sobic001G122400 Sobic001G122400 Sobic001G531200--Sobic001G122400 Sobic008G117400--Sobic004G234200 Sobic008G117400--Sobic004G193400 Sobic008G117400--Sobic002G030200 Sobic008G117400--Sobic001G206200 Sobic008G117400--Sobic002G297300 Sobic008G117400--Sobic008G063500 Sobic008G117400--Sobic002G338000 Sobic008G117400--Sobic002G414400 Sobic008G117400--Sobic010G000500 Sobic001G027600 Sobic001G027600 Sobic003G030900--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic003G030900--Sobic004G044000 Sobic003G030900--Sobic006G248200 Sobic003G030900--Sobic001G040000 Sobic003G030900--Sobic001G240000 Sobic007G013400 Sobic007G013400 Sobic003G030900--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic003G030900--Sobic002G242600 Sobic004G317900 Sobic004G317900 Sobic003G030900--Sobic004G317900 Sobic003G030900--Sobic001G531200 Sobic006G222700--Sobic002G030200 Sobic006G222700--Sobic003G197400 Sobic006G222700--Sobic010G241000 Sobic006G222700--Sobic001G041800 Sobic006G222700--Sobic010G000500 Sobic007G029300 Sobic007G029300 Sobic006G222700--Sobic007G029300 Sobic006G222700--Sobic004G343300 Sobic005G042000 Sobic005G042000 Sobic006G222700--Sobic005G042000 Sobic006G222700--Sobic002G329600 Sobic010G022100--Sobic009G091800 Sobic010G022100--Sobic004G234200 Sobic010G022100--Sobic002G288300 Sobic010G011800 Sobic010G011800 Sobic010G022100--Sobic010G011800 Sobic010G022100--Sobic002G297300 Sobic010G022100--Sobic010G000500 Sobic010G022100--Sobic008G051000 Sobic010G022100--Sobic002G414400 Sobic004G238500 Sobic004G238500 Sobic010G022100--Sobic004G238500 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic001G206200--Sobic002G329600
Octagon: transcription factors


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