Gene annotation
Transcriptome id Sobic.006G222700.1,Sobic.006G222700.2
Synonym Sb06g029210, CHL
Functional annotation OsCHL Chloroplastic lipocalin, expressed
UniProt A0A1B6PNB8 , Q38JB7
Pfam PF08212
Panther DB PTHR11430 PTHR11430:SF32
NCBI CDD KOG4824; Apolipoprotein D/Lipocalin
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47860 : chloroplastic lipocalin
RAP-DB (Rice) LOC_Os04g53490.1 : OsCHL Chloroplastic lipocalin, expressed
MaizeGDB (Corn) Zm00025a009701
Brachypodium KQJ84735 , KQJ84736 , KQJ84737
Barley HORVU2Hr1G106880.1 , HORVU2Hr1G106880.3 , HORVU2Hr1G106880.2 , HORVU2Hr1G106880.5 , HORVU2Hr1G106880.4 , HORVU2Hr1G106880.6
Wheat TraesCS2D02G473300 , TraesCS2B02G496600
Populus -


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cDNA sequences
Sobic.006G222700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
2 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase
3 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
4 Sobic.001G041800 -(PubMedID : 29017446)@magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed K03404: chlD, magnesium chelatase subunit D
5 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
6 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
7 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
8 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
9 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
10 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
11 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
12 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
13 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
14 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
15 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
16 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
17 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
18 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
19 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
20 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -


Gene co-expression network
sample Sobic006G222700 Sobic006G222700 Sobic002G030200 Sobic002G030200 Sobic006G222700--Sobic002G030200 Sobic003G197400 Sobic003G197400 Sobic006G222700--Sobic003G197400 Sobic010G241000 Sobic010G241000 Sobic006G222700--Sobic010G241000 Sobic001G041800 Sobic001G041800 Sobic006G222700--Sobic001G041800 Sobic010G000500 Sobic010G000500 Sobic006G222700--Sobic010G000500 Sobic007G029300 Sobic007G029300 Sobic006G222700--Sobic007G029300 Sobic004G343300 Sobic004G343300 Sobic006G222700--Sobic004G343300 Sobic005G042000 Sobic005G042000 Sobic006G222700--Sobic005G042000 Sobic002G329600 Sobic002G329600 Sobic006G222700--Sobic002G329600 Sobic002G030200--Sobic010G000500 Sobic001G177000 Sobic001G177000 Sobic002G030200--Sobic001G177000 Sobic002G338000 Sobic002G338000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic001G046900 Sobic001G046900 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic003G197400--Sobic001G041800 Sobic003G132100 Sobic003G132100 Sobic003G197400--Sobic003G132100 Sobic003G197400--Sobic004G343300 Sobic003G197400--Sobic006G222700 Sobic006G103400 Sobic006G103400 Sobic003G197400--Sobic006G103400 Sobic003G197400--Sobic007G029300 Sobic004G175500 Sobic004G175500 Sobic003G197400--Sobic004G175500 Sobic001G448400 Sobic001G448400 Sobic003G197400--Sobic001G448400 Sobic002G033800 Sobic002G033800 Sobic003G197400--Sobic002G033800 Sobic009G234600 Sobic009G234600 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic003G052500 Sobic003G052500 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic001G041800--Sobic003G197400 Sobic001G041800--Sobic004G175500 Sobic001G041800--Sobic006G222700 Sobic001G041800--Sobic003G132100 Sobic001G041800--Sobic006G103400 Sobic001G041800--Sobic004G343300 Sobic002G198600 Sobic002G198600 Sobic001G041800--Sobic002G198600 Sobic001G415400 Sobic001G415400 Sobic001G041800--Sobic001G415400 Sobic004G068300 Sobic004G068300 Sobic001G041800--Sobic004G068300 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic002G414400 Sobic002G414400 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic007G029300--Sobic002G329600 Sobic006G264201 Sobic006G264201 Sobic007G029300--Sobic006G264201 Sobic002G339200 Sobic002G339200 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic007G029300--Sobic001G078000 Sobic004G238500 Sobic004G238500 Sobic007G029300--Sobic004G238500 Sobic006G234100 Sobic006G234100 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G343300--Sobic004G175500 Sobic004G343300--Sobic002G033800 Sobic004G235200 Sobic004G235200 Sobic005G042000--Sobic004G235200 Sobic005G042000--Sobic006G105900 Sobic005G042000--Sobic010G241000 Sobic005G087000 Sobic005G087000 Sobic005G042000--Sobic005G087000 Sobic005G042000--Sobic006G264900 Sobic005G042000--Sobic001G046900 Sobic005G042000--Sobic010G000500 Sobic005G042000--Sobic001G078000 Sobic005G042000--Sobic009G234600 Sobic002G329600--Sobic006G264201 Sobic002G329600--Sobic002G339200 Sobic002G329600--Sobic001G078000 Sobic002G329600--Sobic010G241000 Sobic002G329600--Sobic009G234600 Sobic002G329600--Sobic007G029300 Sobic002G297300 Sobic002G297300 Sobic002G329600--Sobic002G297300 Sobic002G329600--Sobic002G030200 Sobic002G329600--Sobic001G448400
Octagon: transcription factors


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