Gene annotation
Transcriptome id Sobic.005G042000.1
Synonym RBCS1A, Sb05g003480,RBCS1A;RBCS1A;RBCS1A;Rubisco small subunit, RbcS
Functional annotation Ribulose bisphosphate carboxylase small chain (PubMedID : 26186930)
rubisco small subunit 1A (PubMedID : 26317421)
RuBisCO small chain (Os) (PubMedID : 27208977)
- (PubMedID : 26976818)
CO2 fixation reaction (PubMedID : 21562335)
ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
UniProt E3WDK7 , C5Y519
Pfam PF12338 PF00101
Panther DB PTHR31262 PTHR31262:SF5
NCBI CDD -
KEGG Orthology K01602; ribulose-bisphosphate carboxylase small chain
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67090 : ribulose bisphosphate carboxylase small chain 1A
RAP-DB (Rice) LOC_Os12g19381.1 : ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033531 , Zm00025a012988
Brachypodium KQJ81957
Barley HORVU2Hr1G010690.16 , HORVU2Hr1G010690.17 , HORVU2Hr1G010690.15 , HORVU2Hr1G010690.12 , HORVU2Hr1G010690.13 , HORVU2Hr1G010690.10 , HORVU2Hr1G010690.11 , HORVU2Hr1G010690.18 , HORVU2Hr1G010690.19 , HORVU2Hr1G010690.4 , HORVU2Hr1G010690.5 , HORVU2Hr1G010690.7 , HORVU2Hr1G010690.1 , HORVU2Hr1G010690.2 , HORVU2Hr1G010690.3 , HORVU2Hr1G010690.8 , HORVU2Hr1G010690.9 , HORVU2Hr1G010690.25 , HORVU2Hr1G010690.23 , HORVU2Hr1G010690.22 , HORVU2Hr1G010690.21
Wheat TraesCS2D02G065300 , TraesCS2A02G066700 , TraesCS2D02G065200 , TraesCS2D02G065100 , TraesCS2A02G067200 , TraesCS2D02G065100 , TraesCS2A02G066900 , TraesCS2B02G079100 , TraesCS2B02G079300 , TraesCS2B02G079300 , TraesCS2B02G079100 , TraesCS2D02G065600 , TraesCS2B02G079200 , TraesCS2A02G067300 , TraesCS2A02G067100 , TraesCS2A02G066800 , TraesCS2B02G079500
Populus -


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cDNA sequences
Sobic.005G042000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
2 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
3 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
4 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
5 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
6 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
7 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
8 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
9 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
11 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
12 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
13 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
14 Sobic.004G249800 expressed protein -
15 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
16 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
17 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
18 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
19 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
20 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1


Gene co-expression network
sample Sobic005G042000 Sobic005G042000 Sobic004G235200 Sobic004G235200 Sobic005G042000--Sobic004G235200 Sobic006G105900 Sobic006G105900 Sobic005G042000--Sobic006G105900 Sobic010G241000 Sobic010G241000 Sobic005G042000--Sobic010G241000 Sobic005G087000 Sobic005G087000 Sobic005G042000--Sobic005G087000 Sobic006G264900 Sobic006G264900 Sobic005G042000--Sobic006G264900 Sobic001G046900 Sobic001G046900 Sobic005G042000--Sobic001G046900 Sobic010G000500 Sobic010G000500 Sobic005G042000--Sobic010G000500 Sobic001G078000 Sobic001G078000 Sobic005G042000--Sobic001G078000 Sobic009G234600 Sobic009G234600 Sobic005G042000--Sobic009G234600 Sobic004G235200--Sobic001G046900 Sobic004G235200--Sobic005G042000 Sobic004G235200--Sobic006G105900 Sobic004G235200--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic002G033900 Sobic002G033900 Sobic004G235200--Sobic002G033900 Sobic010G189300 Sobic010G189300 Sobic004G235200--Sobic010G189300 Sobic003G052500 Sobic003G052500 Sobic004G235200--Sobic003G052500 Sobic006G105900--Sobic001G078000 Sobic006G105900--Sobic004G235200 Sobic006G105900--Sobic005G042000 Sobic007G071500 Sobic007G071500 Sobic006G105900--Sobic007G071500 Sobic006G105900--Sobic010G241000 Sobic004G249800 Sobic004G249800 Sobic006G105900--Sobic004G249800 Sobic006G105900--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic006G105900--Sobic004G343300 Sobic006G105900--Sobic006G264900 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic005G087000--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic005G087000--Sobic010G241000 Sobic002G352100 Sobic002G352100 Sobic005G087000--Sobic002G352100 Sobic005G087000--Sobic009G234600 Sobic005G087000--Sobic005G042000 Sobic006G264900--Sobic009G234600 Sobic006G264900--Sobic010G000500 Sobic006G264900--Sobic006G105900 Sobic006G264900--Sobic010G241000 Sobic006G264900--Sobic005G042000 Sobic006G264900--Sobic002G329600 Sobic006G264900--Sobic001G046900 Sobic006G264900--Sobic001G078000 Sobic006G264900--Sobic001G177000 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic002G242000 Sobic002G242000 Sobic001G046900--Sobic002G242000 Sobic002G338000 Sobic002G338000 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic003G055300 Sobic003G055300 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic002G414400 Sobic002G414400 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic001G078000--Sobic002G329600 Sobic001G078000--Sobic006G105900 Sobic002G339200 Sobic002G339200 Sobic001G078000--Sobic002G339200 Sobic001G078000--Sobic010G241000 Sobic001G078000--Sobic009G234600 Sobic001G078000--Sobic005G042000 Sobic006G264201 Sobic006G264201 Sobic001G078000--Sobic006G264201 Sobic001G078000--Sobic006G264900 Sobic007G029300 Sobic007G029300 Sobic001G078000--Sobic007G029300 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic009G234600--Sobic002G339200 Sobic009G234600--Sobic006G264201 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000
Octagon: transcription factors


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