Gene annotation
Transcriptome id Sobic.001G177000.1
Synonym LHCB2, LHCB2.4, Sb01g015400,LHCB2.3, LHCB2.3
Functional annotation Chorophyll a/b binding protein (PubMedID : 26186930)
Chorophyll a/b binding protein (PubMedID : 26186930)
Light harvesting complex-II subunit B2 (PubMedID : 29017446)
chlorophyll A-B binding protein, putative, expressed
UniProt Q0H633 , C5WTC1 , O81608
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF8
NCBI CDD -
KEGG Orthology K08913; light-harvesting complex II chlorophyll a/b binding protein 2
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT3G27690 : photosystem II light harvesting complex gene 2.3
RAP-DB (Rice) LOC_Os03g39610.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a047961 , Zm00025a038456 , Zm00025a036624 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028624 , Zm00025a028626
Brachypodium KQK14298 , KQK13732 , KQJ91372 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU5Hr1G109260.2 , HORVU5Hr1G124160.1 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G087250.2 , HORVU5Hr1G087250.1
Wheat TraesCS5D02G329200 , TraesCS5B02G462900 , TraesCS5B02G322900 , TraesCS5B02G353200 , TraesCS1D02G375000 , TraesCS1B02G451100 , TraesCS5A02G322500 , TraesCS1B02G317500
Populus PNT05290


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cDNA sequences
Sobic.001G177000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
2 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
3 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
4 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
5 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
6 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
7 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
8 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
9 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
10 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
11 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
12 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
13 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
14 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
15 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
16 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
17 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
18 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
19 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
20 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI


Gene co-expression network
sample Sobic001G177000 Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic001G177000--Sobic004G056900 Sobic002G242000 Sobic002G242000 Sobic001G177000--Sobic002G242000 Sobic001G046900 Sobic001G046900 Sobic001G177000--Sobic001G046900 Sobic010G241000 Sobic010G241000 Sobic001G177000--Sobic010G241000 Sobic002G030200 Sobic002G030200 Sobic001G177000--Sobic002G030200 Sobic008G063500 Sobic008G063500 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic007G136900 Sobic007G136900 Sobic001G177000--Sobic007G136900 Sobic002G338000 Sobic002G338000 Sobic001G177000--Sobic002G338000 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic001G070500 Sobic001G070500 Sobic004G056900--Sobic001G070500 Sobic002G033900 Sobic002G033900 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic006G073500 Sobic006G073500 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic004G056900--Sobic003G052500 Sobic002G242000--Sobic004G056900 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic002G242000--Sobic001G070500 Sobic002G242000--Sobic007G136900 Sobic002G242000--Sobic002G030200 Sobic002G242000--Sobic002G033900 Sobic002G242000--Sobic010G241000 Sobic002G242000--Sobic008G063500 Sobic002G352100 Sobic002G352100 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic005G087000 Sobic005G087000 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic010G241000--Sobic002G030200 Sobic010G000500 Sobic010G000500 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G030200--Sobic002G242000 Sobic002G030200--Sobic010G241000 Sobic003G055300 Sobic003G055300 Sobic002G030200--Sobic003G055300 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic008G063500--Sobic001G177000 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic008G063500--Sobic004G056900 Sobic008G063500--Sobic001G046900 Sobic002G316700 Sobic002G316700 Sobic008G063500--Sobic002G316700 Sobic008G063500--Sobic002G338000 Sobic009G234600--Sobic010G241000 Sobic006G264900 Sobic006G264900 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic002G339200 Sobic002G339200 Sobic009G234600--Sobic002G339200 Sobic006G264201 Sobic006G264201 Sobic009G234600--Sobic006G264201 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic007G136900--Sobic009G229700 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G338000--Sobic002G352100 Sobic002G414400 Sobic002G414400 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600
Octagon: transcription factors


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