Gene annotation
Transcriptome id Sobic.003G052500.1
Synonym PSAL, Sb03g004560, PSAL
Functional annotation Photosystem I reaction center subunit XI (PubMedID : 26186930)
Photosystem I subunit L (PubMedID : 29017446)
photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
UniProt A0A1B6Q1J7
Pfam PF02605
Panther DB PTHR34803 PTHR34803:SF2
NCBI CDD -
KEGG Orthology K02699; photosystem I subunit XI
Gene Ontology GO:0015979; photosynthesis GO:0009538photosystem I reaction center GO:0009522photosystem I


Orthologs (automatic annotation)
TAIR AT4G12800 : photosystem I subunit l
RAP-DB (Rice) LOC_Os12g23200.1 : photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023266 , Zm00025a035714
Brachypodium KQJ86842
Barley HORVU3Hr1G009210.3 , HORVU3Hr1G009210.2 , HORVU3Hr1G009210.1
Wheat TraesCS3A02G052700 , TraesCS3B02G061700 , TraesCS3D02G051800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G052500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
2 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
3 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
4 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
5 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
6 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
7 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
8 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
9 Sobic.001G338700 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
11 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
12 Sobic.010G109500 expressed protein -
13 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
14 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
15 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
16 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
17 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
18 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
19 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
20 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -


Gene co-expression network
sample Sobic003G052500 Sobic003G052500 Sobic010G241000 Sobic010G241000 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic006G105900 Sobic006G105900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G209800 Sobic003G209800 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic009G234600 Sobic009G234600 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic006G073500--Sobic002G033900 Sobic009G229700 Sobic009G229700 Sobic006G073500--Sobic009G229700 Sobic005G087000 Sobic005G087000 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic002G242000 Sobic002G242000 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic004G056900--Sobic002G033900 Sobic007G136900 Sobic007G136900 Sobic004G056900--Sobic007G136900 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic006G105900--Sobic001G078000 Sobic006G105900--Sobic004G235200 Sobic005G042000 Sobic005G042000 Sobic006G105900--Sobic005G042000 Sobic007G071500 Sobic007G071500 Sobic006G105900--Sobic007G071500 Sobic006G105900--Sobic010G241000 Sobic004G249800 Sobic004G249800 Sobic006G105900--Sobic004G249800 Sobic006G105900--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic006G105900--Sobic004G343300 Sobic006G264900 Sobic006G264900 Sobic006G105900--Sobic006G264900 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic001G070500--Sobic003G052500 Sobic003G209800--Sobic003G052500 Sobic010G109500 Sobic010G109500 Sobic003G209800--Sobic010G109500 Sobic001G274600 Sobic001G274600 Sobic003G209800--Sobic001G274600 Sobic006G011100 Sobic006G011100 Sobic003G209800--Sobic006G011100 Sobic008G038300 Sobic008G038300 Sobic003G209800--Sobic008G038300 Sobic006G234100 Sobic006G234100 Sobic003G209800--Sobic006G234100 Sobic003G209800--Sobic006G105900 Sobic004G071800 Sobic004G071800 Sobic003G209800--Sobic004G071800 Sobic002G000500 Sobic002G000500 Sobic003G209800--Sobic002G000500 Sobic004G235200--Sobic001G046900 Sobic004G235200--Sobic005G042000 Sobic004G235200--Sobic006G105900 Sobic004G235200--Sobic005G087000 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic004G235200--Sobic002G033900 Sobic004G235200--Sobic010G189300 Sobic004G235200--Sobic003G052500 Sobic001G338700--Sobic003G052500 Sobic001G338700--Sobic006G011100 Sobic001G338700--Sobic010G109500 Sobic001G338700--Sobic006G234100 Sobic001G338700--Sobic004G056900 Sobic001G338700--Sobic007G071500 Sobic001G338700--Sobic001G070500 Sobic001G338700--Sobic003G209800 Sobic004G035500 Sobic004G035500 Sobic001G338700--Sobic004G035500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.