Gene annotation
Transcriptome id Sobic.005G087000.1
Synonym LHCB5, LHCB5, Sb05g007070
Functional annotation Chorophyll a/b binding protein CP26 (PubMedID : 26186930)
Light harvesting complex PSII subunit 5 (At) (PubMedID : 27208977)
Light harvesting complex-II subunit B5 (PubMedID : 29017446)
chlorophyll A-B binding protein, putative, expressed
UniProt C5Y7U2
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF16
NCBI CDD -
KEGG Orthology K08916; light-harvesting complex II chlorophyll a/b binding protein 5
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT4G10340 : light harvesting complex of photosystem II 5
RAP-DB (Rice) LOC_Os11g13890.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a029543 , Zm00025a028623 , Zm00025a028624 , Zm00025a015577
Brachypodium KQJ88785 , KQK15763 , KQJ91372 , KQK04838
Barley HORVU7Hr1G040380.8 , HORVU7Hr1G040380.9 , HORVU7Hr1G040380.6 , HORVU7Hr1G040380.7 , HORVU7Hr1G040380.4 , HORVU7Hr1G040380.5 , HORVU7Hr1G040380.2 , HORVU7Hr1G040380.3 , HORVU7Hr1G040380.1 , HORVU5Hr1G124160.1 , HORVU5Hr1G087250.1 , HORVU1Hr1G088930.2 , HORVU1Hr1G088930.1 , HORVU6Hr1G091660.1 , HORVU4Hr1G015260.4 , HORVU4Hr1G015260.5 , HORVU4Hr1G015260.1 , HORVU4Hr1G015260.2 , HORVU4Hr1G015260.3 , HORVU5Hr1G087250.2 , HORVU6Hr1G091650.1 , HORVU7Hr1G040380.10 , HORVU7Hr1G040380.11 , HORVU1Hr1G088920.2 , HORVU1Hr1G088920.3
Wheat TraesCS4D02G086400 , TraesCS4A02G226900 , TraesCS4A02G226900 , TraesCS5B02G353200 , TraesCS4B02G089500 , TraesCS1B02G317500 , TraesCS4A02G226900
Populus -


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cDNA sequences
Sobic.005G087000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
2 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
3 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
4 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
5 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
6 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
7 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
8 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
9 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
10 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
11 Sobic.005G152600 - -
12 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
13 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
14 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
15 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
16 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
17 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
18 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
19 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
20 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4


Gene co-expression network
sample Sobic005G087000 Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic005G087000--Sobic006G073500 Sobic009G229700 Sobic009G229700 Sobic005G087000--Sobic009G229700 Sobic001G046900 Sobic001G046900 Sobic005G087000--Sobic001G046900 Sobic002G033900 Sobic002G033900 Sobic005G087000--Sobic002G033900 Sobic004G235200 Sobic004G235200 Sobic005G087000--Sobic004G235200 Sobic010G241000 Sobic010G241000 Sobic005G087000--Sobic010G241000 Sobic002G352100 Sobic002G352100 Sobic005G087000--Sobic002G352100 Sobic009G234600 Sobic009G234600 Sobic005G087000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic005G087000--Sobic005G042000 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic001G070500 Sobic001G070500 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic004G056900 Sobic004G056900 Sobic006G073500--Sobic004G056900 Sobic010G189300 Sobic010G189300 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic006G073500--Sobic003G052500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic005G152600 Sobic005G152600 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G177000 Sobic001G177000 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic002G242000 Sobic002G242000 Sobic001G046900--Sobic002G242000 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic004G235200--Sobic001G046900 Sobic004G235200--Sobic005G042000 Sobic006G105900 Sobic006G105900 Sobic004G235200--Sobic006G105900 Sobic004G235200--Sobic005G087000 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic004G235200--Sobic002G033900 Sobic004G235200--Sobic010G189300 Sobic004G235200--Sobic003G052500 Sobic010G241000--Sobic009G234600 Sobic002G329600 Sobic002G329600 Sobic010G241000--Sobic002G329600 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic001G078000 Sobic001G078000 Sobic010G241000--Sobic001G078000 Sobic010G241000--Sobic004G056900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic002G352100--Sobic001G046900 Sobic002G352100--Sobic007G136900 Sobic002G352100--Sobic010G189300 Sobic002G338000 Sobic002G338000 Sobic002G352100--Sobic002G338000 Sobic002G352100--Sobic005G087000 Sobic003G055300 Sobic003G055300 Sobic002G352100--Sobic003G055300 Sobic009G165200 Sobic009G165200 Sobic002G352100--Sobic009G165200 Sobic002G352100--Sobic009G229700 Sobic002G352100--Sobic004G235200 Sobic009G234600--Sobic010G241000 Sobic006G264900 Sobic006G264900 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic002G339200 Sobic002G339200 Sobic009G234600--Sobic002G339200 Sobic006G264201 Sobic006G264201 Sobic009G234600--Sobic006G264201 Sobic010G000500 Sobic010G000500 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic009G234600--Sobic001G078000 Sobic005G042000--Sobic004G235200 Sobic005G042000--Sobic006G105900 Sobic005G042000--Sobic010G241000 Sobic005G042000--Sobic005G087000 Sobic005G042000--Sobic006G264900 Sobic005G042000--Sobic001G046900 Sobic005G042000--Sobic010G000500 Sobic005G042000--Sobic001G078000 Sobic005G042000--Sobic009G234600
Octagon: transcription factors


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