Gene annotation
Transcriptome id Sobic.010G189300.1,Sobic.010G189300.2
Synonym Sb10g023930, LHCA3
Functional annotation Chorophyll a/b binding protein 8 (PubMedID : 26186930)
photosystem I light harvesting complex gene 3 (PubMedID : 26465154)
chlorophyll A-B binding protein, putative, expressed
UniProt A0A194YK39 , A0A194YK35
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF14
NCBI CDD -
KEGG Orthology K08909; light-harvesting complex I chlorophyll a/b binding protein 3
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT1G61520 : photosystem I light harvesting complex gene 3
RAP-DB (Rice) LOC_Os02g10390.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a051590
Brachypodium KQJ93871 , KQK18468
Barley HORVU6Hr1G033160.22 , HORVU6Hr1G033160.23 , HORVU6Hr1G033160.7 , HORVU6Hr1G033160.17 , HORVU6Hr1G033160.16 , HORVU6Hr1G033160.11 , HORVU6Hr1G033160.10 , HORVU6Hr1G033160.13 , HORVU6Hr1G033160.12 , HORVU6Hr1G033160.19 , HORVU6Hr1G033160.18 , HORVU7Hr1G046320.6 , HORVU7Hr1G046320.7 , HORVU7Hr1G046320.5 , HORVU7Hr1G046320.2 , HORVU7Hr1G046320.3 , HORVU7Hr1G046320.1 , HORVU7Hr1G046320.8 , HORVU7Hr1G046320.9 , HORVU6Hr1G033160.15 , HORVU6Hr1G033160.2 , HORVU6Hr1G033160.3 , HORVU6Hr1G033160.1 , HORVU6Hr1G033160.5 , HORVU6Hr1G033160.4 , HORVU6Hr1G033160.6 , HORVU6Hr1G033160.9 , HORVU6Hr1G033160.8
Wheat TraesCS6B02G191500 , TraesCS5B02G462900 , TraesCS1D02G375000 , TraesCS7B02G192500 , TraesCS6D02G152700 , TraesCS6A02G159800 , TraesCS7A02G227100 , TraesCS7D02G227300
Populus -


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cDNA sequences
Sobic.010G189300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
2 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
3 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
4 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
5 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
6 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
7 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
8 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
9 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
10 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
11 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
12 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
13 Sobic.003G369000 - -
14 Sobic.001G066600 mTERF domain containing protein, expressed -
15 Sobic.004G272600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
17 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
18 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
19 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
20 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -


Gene co-expression network
sample Sobic010G189300 Sobic010G189300 Sobic001G070500 Sobic001G070500 Sobic010G189300--Sobic001G070500 Sobic007G136900 Sobic007G136900 Sobic010G189300--Sobic007G136900 Sobic001G046900 Sobic001G046900 Sobic010G189300--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G189300--Sobic006G073500 Sobic002G352100 Sobic002G352100 Sobic010G189300--Sobic002G352100 Sobic002G033900 Sobic002G033900 Sobic010G189300--Sobic002G033900 Sobic009G229700 Sobic009G229700 Sobic010G189300--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic010G189300--Sobic004G235200 Sobic005G087000 Sobic005G087000 Sobic010G189300--Sobic005G087000 Sobic001G070500--Sobic002G033900 Sobic001G070500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic001G070500--Sobic004G056900 Sobic001G070500--Sobic010G189300 Sobic001G070500--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic001G070500--Sobic002G242000 Sobic001G070500--Sobic001G046900 Sobic001G070500--Sobic007G136900 Sobic003G052500 Sobic003G052500 Sobic001G070500--Sobic003G052500 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic001G177000 Sobic001G177000 Sobic007G136900--Sobic001G177000 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic007G136900--Sobic009G229700 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic010G241000 Sobic010G241000 Sobic006G073500--Sobic010G241000 Sobic006G073500--Sobic003G052500 Sobic002G352100--Sobic001G046900 Sobic002G352100--Sobic007G136900 Sobic002G352100--Sobic010G189300 Sobic002G338000 Sobic002G338000 Sobic002G352100--Sobic002G338000 Sobic002G352100--Sobic005G087000 Sobic003G055300 Sobic003G055300 Sobic002G352100--Sobic003G055300 Sobic009G165200 Sobic009G165200 Sobic002G352100--Sobic009G165200 Sobic002G352100--Sobic009G229700 Sobic002G352100--Sobic004G235200 Sobic002G033900--Sobic006G073500 Sobic002G033900--Sobic009G229700 Sobic002G033900--Sobic001G070500 Sobic002G033900--Sobic001G046900 Sobic002G033900--Sobic005G087000 Sobic002G033900--Sobic004G056900 Sobic002G033900--Sobic010G189300 Sobic002G033900--Sobic010G241000 Sobic002G033900--Sobic003G052500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic005G152600 Sobic005G152600 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic004G235200--Sobic001G046900 Sobic005G042000 Sobic005G042000 Sobic004G235200--Sobic005G042000 Sobic006G105900 Sobic006G105900 Sobic004G235200--Sobic006G105900 Sobic004G235200--Sobic005G087000 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic004G235200--Sobic002G033900 Sobic004G235200--Sobic010G189300 Sobic004G235200--Sobic003G052500 Sobic005G087000--Sobic006G073500 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic005G087000--Sobic010G241000 Sobic005G087000--Sobic002G352100 Sobic009G234600 Sobic009G234600 Sobic005G087000--Sobic009G234600 Sobic005G087000--Sobic005G042000
Octagon: transcription factors


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