Gene annotation
Transcriptome id Sobic.002G352100.2,Sobic.002G352100.1,Sobic.002G352100.3
Synonym LHCA2, Sb02g037410
Functional annotation Chorophyll a/b binding protein 7 (PubMedID : 26186930)
Chlorophyll a-b binding protein (At) (PubMedID : 27208977)
Chlorophyll binding protein LHCA2 (At) (PubMedID : 27208977)
chlorophyll A-B binding protein, putative, expressed
UniProt A0A1B6QF68 , A0A1B6QF53 , A0A1B6QF49
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF13 PTHR21649
NCBI CDD -
KEGG Orthology K08908; light-harvesting complex I chlorophyll a/b binding protein 2
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT3G61470 : photosystem I light harvesting complex gene 2
RAP-DB (Rice) LOC_Os07g38960.2,LOC_Os07g38960.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a014984 , Zm00025a013984 , Zm00025a048498
Brachypodium KQK15547
Barley HORVU5Hr1G062240.2 , HORVU2Hr1G036960.6 , HORVU2Hr1G036960.7 , HORVU2Hr1G036960.4 , HORVU2Hr1G036960.5 , HORVU2Hr1G036960.2 , HORVU2Hr1G036960.3 , HORVU2Hr1G036960.1 , HORVU2Hr1G036960.8 , HORVU2Hr1G036960.9 , HORVU5Hr1G062240.1 , HORVU5Hr1G062240.3 , HORVU5Hr1G062240.5 , HORVU5Hr1G062240.4
Wheat TraesCS2B02G220100 , TraesCS2A02G187200 , TraesCS2D02G200700
Populus -


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cDNA sequences
Sobic.002G352100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
2 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
3 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
4 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
5 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
6 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
7 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
8 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
9 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
10 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
11 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
12 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
13 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
14 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
15 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
16 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
17 Sobic.003G369000 - -
18 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
19 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
20 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H


Gene co-expression network
sample Sobic002G352100 Sobic002G352100 Sobic001G046900 Sobic001G046900 Sobic002G352100--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic002G352100--Sobic007G136900 Sobic010G189300 Sobic010G189300 Sobic002G352100--Sobic010G189300 Sobic002G338000 Sobic002G338000 Sobic002G352100--Sobic002G338000 Sobic005G087000 Sobic005G087000 Sobic002G352100--Sobic005G087000 Sobic003G055300 Sobic003G055300 Sobic002G352100--Sobic003G055300 Sobic009G165200 Sobic009G165200 Sobic002G352100--Sobic009G165200 Sobic009G229700 Sobic009G229700 Sobic002G352100--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic002G352100--Sobic004G235200 Sobic001G046900--Sobic002G352100 Sobic004G056900 Sobic004G056900 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic001G046900--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic001G046900--Sobic002G033900 Sobic001G177000 Sobic001G177000 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic002G242000 Sobic002G242000 Sobic001G046900--Sobic002G242000 Sobic007G136900--Sobic002G352100 Sobic007G136900--Sobic001G046900 Sobic007G136900--Sobic004G056900 Sobic007G136900--Sobic010G189300 Sobic007G136900--Sobic002G242000 Sobic007G136900--Sobic001G177000 Sobic001G070500 Sobic001G070500 Sobic007G136900--Sobic001G070500 Sobic007G136900--Sobic006G073500 Sobic007G136900--Sobic009G229700 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic010G189300--Sobic001G046900 Sobic010G189300--Sobic006G073500 Sobic010G189300--Sobic002G352100 Sobic010G189300--Sobic002G033900 Sobic010G189300--Sobic009G229700 Sobic010G189300--Sobic004G235200 Sobic010G189300--Sobic005G087000 Sobic010G000500 Sobic010G000500 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic002G338000--Sobic001G206200 Sobic002G030200 Sobic002G030200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G338000--Sobic002G352100 Sobic002G414400 Sobic002G414400 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic009G234600 Sobic009G234600 Sobic002G338000--Sobic009G234600 Sobic005G087000--Sobic006G073500 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic010G241000 Sobic010G241000 Sobic005G087000--Sobic010G241000 Sobic005G087000--Sobic002G352100 Sobic005G087000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic005G087000--Sobic005G042000 Sobic003G055300--Sobic002G338000 Sobic003G055300--Sobic001G206200 Sobic003G055300--Sobic010G000500 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic003G055300--Sobic005G087000 Sobic003G055300--Sobic009G229700 Sobic003G055300--Sobic002G242000 Sobic009G165200--Sobic002G352100 Sobic009G165200--Sobic009G229700 Sobic009G165200--Sobic005G087000 Sobic005G152600 Sobic005G152600 Sobic009G165200--Sobic005G152600 Sobic009G165200--Sobic010G189300 Sobic001G066600 Sobic001G066600 Sobic009G165200--Sobic001G066600 Sobic009G165200--Sobic003G055300 Sobic009G165200--Sobic001G046900 Sobic009G165200--Sobic006G073500 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic004G235200--Sobic001G046900 Sobic004G235200--Sobic005G042000 Sobic006G105900 Sobic006G105900 Sobic004G235200--Sobic006G105900 Sobic004G235200--Sobic005G087000 Sobic004G235200--Sobic006G073500 Sobic004G235200--Sobic010G241000 Sobic004G235200--Sobic002G033900 Sobic004G235200--Sobic010G189300 Sobic003G052500 Sobic003G052500 Sobic004G235200--Sobic003G052500
Octagon: transcription factors


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