Gene annotation
Transcriptome id Sobic.010G000500.1
Synonym PETE1, Sb10g000230
Functional annotation Plastocyanin (PubMedID : 26186930)
plastocyanin, chloroplast precursor, putative, expressed
UniProt C5Z216
Pfam PF13473
Panther DB PTHR34192 PTHR34192:SF2
NCBI CDD -
KEGG Orthology K02638; plastocyanin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76100 : plastocyanin 1
RAP-DB (Rice) LOC_Os06g01210.1 : plastocyanin, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050354 , Zm00025a041142
Brachypodium -
Barley HORVU7Hr1G000900.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G000500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
2 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
3 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
4 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
5 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
6 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
7 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
8 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
9 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
10 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
11 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
12 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
13 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
14 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
15 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
16 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
17 Sobic.002G297300 expressed protein -
18 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
19 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
20 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -


Gene co-expression network
sample Sobic010G000500 Sobic010G000500 Sobic002G338000 Sobic002G338000 Sobic010G000500--Sobic002G338000 Sobic002G030200 Sobic002G030200 Sobic010G000500--Sobic002G030200 Sobic003G055300 Sobic003G055300 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic009G234600 Sobic009G234600 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic001G046900 Sobic001G046900 Sobic010G000500--Sobic001G046900 Sobic002G414400 Sobic002G414400 Sobic010G000500--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic010G000500--Sobic001G177000 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G030200--Sobic002G329600 Sobic003G055300--Sobic002G338000 Sobic003G055300--Sobic001G206200 Sobic003G055300--Sobic010G000500 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic005G087000 Sobic005G087000 Sobic003G055300--Sobic005G087000 Sobic009G229700 Sobic009G229700 Sobic003G055300--Sobic009G229700 Sobic003G055300--Sobic002G242000 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic001G206200--Sobic009G234600 Sobic004G234200 Sobic004G234200 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic001G206200--Sobic002G329600 Sobic009G234600--Sobic010G241000 Sobic009G234600--Sobic006G264900 Sobic009G234600--Sobic002G329600 Sobic009G234600--Sobic001G177000 Sobic002G339200 Sobic002G339200 Sobic009G234600--Sobic002G339200 Sobic006G264201 Sobic006G264201 Sobic009G234600--Sobic006G264201 Sobic009G234600--Sobic010G000500 Sobic009G234600--Sobic001G046900 Sobic001G078000 Sobic001G078000 Sobic009G234600--Sobic001G078000 Sobic006G264900--Sobic009G234600 Sobic006G264900--Sobic010G000500 Sobic006G105900 Sobic006G105900 Sobic006G264900--Sobic006G105900 Sobic006G264900--Sobic010G241000 Sobic005G042000 Sobic005G042000 Sobic006G264900--Sobic005G042000 Sobic006G264900--Sobic002G329600 Sobic006G264900--Sobic001G046900 Sobic006G264900--Sobic001G078000 Sobic006G264900--Sobic001G177000 Sobic001G046900--Sobic002G352100 Sobic004G056900 Sobic004G056900 Sobic001G046900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic001G046900--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic004G193400 Sobic004G193400 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G297300 Sobic002G297300 Sobic002G414400--Sobic002G297300 Sobic002G288300 Sobic002G288300 Sobic002G414400--Sobic002G288300 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000
Octagon: transcription factors


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