Gene annotation
Transcriptome id Sobic.002G288300.1
Synonym Sb02g032040, LHCB1.5, LHB1B2
Functional annotation Chorophyll a/b binding protein 1 (PubMedID : 26186930)
chlorophyll A-B binding protein, putative, expressed
UniProt C5X7M3
Pfam PF00504
Panther DB PTHR21649 PTHR21649:SF20
NCBI CDD -
KEGG Orthology K08912; light-harvesting complex II chlorophyll a/b binding protein 1
Gene Ontology GO:0016020; membrane GO:0009765photosynthesis, light harvesting


Orthologs (automatic annotation)
TAIR AT2G34420 : photosystem II light harvesting complex gene B1B2
RAP-DB (Rice) LOC_Os01g41710.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a048387 , Zm00025a007156 , Zm00025a047961 , Zm00025a014904 , Zm00025a038456 , Zm00025a036624 , Zm00025a028623 , Zm00025a007161 , Zm00025a044593 , Zm00025a028626 , Zm00025a028624
Brachypodium KQK14298 , KQK13732 , KQJ91372 , KQJ86724 , KQK04837 , PNT68562 , PNT68561 , PNT68560 , KQK04838
Barley HORVU5Hr1G109260.4 , HORVU5Hr1G109260.3 , HORVU5Hr1G109260.2 , HORVU5Hr1G109260.1 , HORVU5Hr1G109250.1 , HORVU1Hr1G088880.2 , HORVU1Hr1G088880.1 , HORVU5Hr1G124160.1 , HORVU1Hr1G089180.1 , HORVU7Hr1G058120.1 , HORVU1Hr1G088870.2 , HORVU7Hr1G058120.2 , HORVU5Hr1G082420.2 , HORVU5Hr1G082420.1 , HORVU5Hr1G109360.2 , HORVU5Hr1G109360.1 , HORVU5Hr1G087250.2 , HORVU5Hr1G087250.1 , HORVU2Hr1G040780.8 , HORVU2Hr1G040780.7 , HORVU2Hr1G040780.6 , HORVU2Hr1G040780.5 , HORVU2Hr1G040780.4 , HORVU2Hr1G040780.3 , HORVU2Hr1G040780.2 , HORVU2Hr1G040780.1 , HORVU6Hr1G016890.1 , HORVU6Hr1G016890.2 , HORVU6Hr1G016890.3 , HORVU6Hr1G016890.4 , HORVU6Hr1G016890.5 , HORVU6Hr1G016890.6 , HORVU1Hr1G088870.1
Wheat TraesCS5D02G329200 , TraesCS5A02G322500 , TraesCS2A02G204800 , TraesCS5B02G462900 , TraesCS5B02G322900 , TraesCS1D02G428200 , TraesCS5B02G353200 , TraesCS1D02G375000 , TraesCS5A02G454400 , TraesCS1B02G317500
Populus PNT05290


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cDNA sequences
Sobic.002G288300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
2 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
3 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
4 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
5 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
6 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
7 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
8 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
9 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
10 Sobic.002G297300 expressed protein -
11 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
12 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
13 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
14 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
15 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
16 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
17 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
18 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
19 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
20 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3


Gene co-expression network
sample Sobic002G288300 Sobic002G288300 Sobic009G091800 Sobic009G091800 Sobic002G288300--Sobic009G091800 Sobic010G022100 Sobic010G022100 Sobic002G288300--Sobic010G022100 Sobic010G000500 Sobic010G000500 Sobic002G288300--Sobic010G000500 Sobic004G234200 Sobic004G234200 Sobic002G288300--Sobic004G234200 Sobic002G338000 Sobic002G338000 Sobic002G288300--Sobic002G338000 Sobic002G414400 Sobic002G414400 Sobic002G288300--Sobic002G414400 Sobic010G011800 Sobic010G011800 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic006G264900 Sobic006G264900 Sobic002G288300--Sobic006G264900 Sobic008G051000 Sobic008G051000 Sobic009G091800--Sobic008G051000 Sobic009G091800--Sobic002G288300 Sobic009G091800--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic009G091800--Sobic002G297300 Sobic009G091800--Sobic010G022100 Sobic006G264201 Sobic006G264201 Sobic009G091800--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic009G091800--Sobic004G238500 Sobic009G091800--Sobic010G000500 Sobic007G116950 Sobic007G116950 Sobic009G091800--Sobic007G116950 Sobic010G022100--Sobic009G091800 Sobic010G022100--Sobic004G234200 Sobic010G022100--Sobic002G288300 Sobic010G022100--Sobic010G011800 Sobic010G022100--Sobic002G297300 Sobic010G022100--Sobic010G000500 Sobic010G022100--Sobic008G051000 Sobic010G022100--Sobic002G414400 Sobic010G022100--Sobic004G238500 Sobic010G000500--Sobic002G338000 Sobic002G030200 Sobic002G030200 Sobic010G000500--Sobic002G030200 Sobic003G055300 Sobic003G055300 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic009G234600 Sobic009G234600 Sobic010G000500--Sobic009G234600 Sobic010G000500--Sobic006G264900 Sobic001G046900 Sobic001G046900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic010G000500--Sobic001G177000 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G414400--Sobic002G297300 Sobic002G414400--Sobic002G288300 Sobic010G011800--Sobic010G022100 Sobic010G011800--Sobic002G288300 Sobic010G011800--Sobic009G091800 Sobic010G011800--Sobic010G000500 Sobic002G198600 Sobic002G198600 Sobic010G011800--Sobic002G198600 Sobic010G011800--Sobic002G030200 Sobic010G011800--Sobic004G238500 Sobic010G011800--Sobic004G234200 Sobic010G011800--Sobic001G177000 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic004G193400--Sobic002G297300 Sobic007G023300 Sobic007G023300 Sobic004G193400--Sobic007G023300 Sobic004G193400--Sobic009G091800 Sobic004G193400--Sobic002G288300 Sobic004G193400--Sobic010G022100 Sobic008G117400 Sobic008G117400 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200 Sobic006G264900--Sobic009G234600 Sobic006G264900--Sobic010G000500 Sobic006G105900 Sobic006G105900 Sobic006G264900--Sobic006G105900 Sobic010G241000 Sobic010G241000 Sobic006G264900--Sobic010G241000 Sobic005G042000 Sobic005G042000 Sobic006G264900--Sobic005G042000 Sobic002G329600 Sobic002G329600 Sobic006G264900--Sobic002G329600 Sobic006G264900--Sobic001G046900 Sobic001G078000 Sobic001G078000 Sobic006G264900--Sobic001G078000 Sobic006G264900--Sobic001G177000
Octagon: transcription factors


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