Gene annotation
Transcriptome id Sobic.010G011800.1
Synonym OTP82, Sb10g001160
Functional annotation OsFBO18 - F-box and other domain containing protein, expressed
UniProt C5Z2S9
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G29760 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os06g02400.1 : OsFBO18 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030836 , Zm00025a056100
Brachypodium KQK04628 , KQK04630 , KQK11841
Barley HORVU4Hr1G064880.1 , HORVU4Hr1G064880.2
Wheat -
Populus -


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cDNA sequences
Sobic.010G011800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
2 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
3 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
4 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
5 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
6 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
7 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
8 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
9 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
10 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
11 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
12 Sobic.003G150600 pectinacetylesterase domain containing protein, expressed -
13 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
14 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
15 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
16 Sobic.003G433900 expressed protein -
17 Sobic.002G065200 pentatricopeptide, putative, expressed -
18 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
19 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
20 Sobic.002G297300 expressed protein -


Gene co-expression network
sample Sobic010G011800 Sobic010G011800 Sobic010G022100 Sobic010G022100 Sobic010G011800--Sobic010G022100 Sobic002G288300 Sobic002G288300 Sobic010G011800--Sobic002G288300 Sobic009G091800 Sobic009G091800 Sobic010G011800--Sobic009G091800 Sobic010G000500 Sobic010G000500 Sobic010G011800--Sobic010G000500 Sobic002G198600 Sobic002G198600 Sobic010G011800--Sobic002G198600 Sobic002G030200 Sobic002G030200 Sobic010G011800--Sobic002G030200 Sobic004G238500 Sobic004G238500 Sobic010G011800--Sobic004G238500 Sobic004G234200 Sobic004G234200 Sobic010G011800--Sobic004G234200 Sobic001G177000 Sobic001G177000 Sobic010G011800--Sobic001G177000 Sobic010G022100--Sobic009G091800 Sobic010G022100--Sobic004G234200 Sobic010G022100--Sobic002G288300 Sobic010G022100--Sobic010G011800 Sobic002G297300 Sobic002G297300 Sobic010G022100--Sobic002G297300 Sobic010G022100--Sobic010G000500 Sobic008G051000 Sobic008G051000 Sobic010G022100--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic010G022100--Sobic002G414400 Sobic010G022100--Sobic004G238500 Sobic002G288300--Sobic009G091800 Sobic002G288300--Sobic010G022100 Sobic002G288300--Sobic010G000500 Sobic002G288300--Sobic004G234200 Sobic002G338000 Sobic002G338000 Sobic002G288300--Sobic002G338000 Sobic002G288300--Sobic002G414400 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic006G264900 Sobic006G264900 Sobic002G288300--Sobic006G264900 Sobic009G091800--Sobic008G051000 Sobic009G091800--Sobic002G288300 Sobic009G091800--Sobic004G234200 Sobic009G091800--Sobic002G297300 Sobic009G091800--Sobic010G022100 Sobic006G264201 Sobic006G264201 Sobic009G091800--Sobic006G264201 Sobic009G091800--Sobic004G238500 Sobic009G091800--Sobic010G000500 Sobic007G116950 Sobic007G116950 Sobic009G091800--Sobic007G116950 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic003G055300 Sobic003G055300 Sobic010G000500--Sobic003G055300 Sobic001G206200 Sobic001G206200 Sobic010G000500--Sobic001G206200 Sobic009G234600 Sobic009G234600 Sobic010G000500--Sobic009G234600 Sobic010G000500--Sobic006G264900 Sobic001G046900 Sobic001G046900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic004G175500 Sobic004G175500 Sobic002G198600--Sobic004G175500 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic003G386300 Sobic003G386300 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic002G198600--Sobic010G011800 Sobic004G311100 Sobic004G311100 Sobic002G198600--Sobic004G311100 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G242000 Sobic002G242000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic002G030200--Sobic002G329600 Sobic004G238500--Sobic006G264201 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic004G238500--Sobic007G116950 Sobic004G238500--Sobic003G132100 Sobic001G382100 Sobic001G382100 Sobic004G238500--Sobic001G382100 Sobic007G029300 Sobic007G029300 Sobic004G238500--Sobic007G029300 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic004G056900 Sobic004G056900 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic001G177000--Sobic009G234600 Sobic007G136900 Sobic007G136900 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000
Octagon: transcription factors


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