Gene annotation
Transcriptome id Sobic.003G150600.1,Sobic.003G150600.2
Synonym Sb03g013070
Functional annotation pectinacetylesterase domain containing protein, expressed
UniProt A0A1B6Q3C5 , A0A1B6Q3C0
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF16
NCBI CDD KOG4287; Pectin acetylesterase and similar proteins
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT2G46930 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os01g21630.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036143 , Zm00025a024358
Brachypodium KQK04159 , KQK04158 , KQK04160
Barley HORVU5Hr1G114540.18 , HORVU5Hr1G114540.12 , HORVU5Hr1G114540.13 , HORVU5Hr1G114540.10 , HORVU5Hr1G114540.16 , HORVU5Hr1G114540.17 , HORVU5Hr1G114540.15 , HORVU2Hr1G090330.20 , HORVU2Hr1G090330.13 , HORVU2Hr1G090330.12 , HORVU2Hr1G090330.11 , HORVU2Hr1G090330.10 , HORVU2Hr1G090330.17 , HORVU2Hr1G090330.16 , HORVU2Hr1G090330.15 , HORVU2Hr1G090330.14 , HORVU2Hr1G090330.19 , HORVU2Hr1G090330.18 , HORVU5Hr1G114540.1 , HORVU5Hr1G114540.3 , HORVU5Hr1G114540.4 , HORVU5Hr1G114540.5 , HORVU5Hr1G114540.6 , HORVU5Hr1G114540.7 , HORVU5Hr1G114540.8 , HORVU5Hr1G114540.9 , HORVU2Hr1G090330.3 , HORVU2Hr1G090330.2 , HORVU2Hr1G090330.1 , HORVU2Hr1G090330.7 , HORVU2Hr1G090330.6 , HORVU2Hr1G090330.5 , HORVU2Hr1G090330.4 , HORVU2Hr1G090330.9 , HORVU2Hr1G090330.8
Wheat TraesCS2B02G394300 , TraesCS5A02G322400 , TraesCS2D02G373700 , TraesCS5A02G485900 , TraesCS5D02G499900 , TraesCS5B02G499800 , TraesCS5B02G499800 , TraesCS5B02G499700 , TraesCS5B02G499700 , TraesCS2A02G377100 , TraesCS5D02G500000 , TraesCS5A02G486000
Populus -


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cDNA sequences
Sobic.003G150600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G221300 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase
2 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
3 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
4 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
5 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
6 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
7 Sobic.003G433900 expressed protein -
8 Sobic.003G069200 transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
9 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
11 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
12 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
13 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
14 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -
15 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
16 Sobic.001G382100 Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed K08902: photosystem II Psb27 protein
17 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
18 Sobic.004G114800 expressed protein -
19 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
20 Sobic.001G531200 methylthioribose kinase, putative, expressed -


Gene co-expression network
sample Sobic003G150600 Sobic003G150600 Sobic001G221300 Sobic001G221300 Sobic003G150600--Sobic001G221300 Sobic010G011800 Sobic010G011800 Sobic003G150600--Sobic010G011800 Sobic009G091800 Sobic009G091800 Sobic003G150600--Sobic009G091800 Sobic008G051000 Sobic008G051000 Sobic003G150600--Sobic008G051000 Sobic004G238500 Sobic004G238500 Sobic003G150600--Sobic004G238500 Sobic010G022100 Sobic010G022100 Sobic003G150600--Sobic010G022100 Sobic003G433900 Sobic003G433900 Sobic003G150600--Sobic003G433900 Sobic003G069200 Sobic003G069200 Sobic003G150600--Sobic003G069200 Sobic002G288300 Sobic002G288300 Sobic003G150600--Sobic002G288300 Sobic001G221300--Sobic003G069200 Sobic001G221300--Sobic003G150600 Sobic001G221300--Sobic003G433900 Sobic002G198600 Sobic002G198600 Sobic001G221300--Sobic002G198600 Sobic002G227700 Sobic002G227700 Sobic001G221300--Sobic002G227700 Sobic003G386300 Sobic003G386300 Sobic001G221300--Sobic003G386300 Sobic006G248200 Sobic006G248200 Sobic001G221300--Sobic006G248200 Sobic006G013800 Sobic006G013800 Sobic001G221300--Sobic006G013800 Sobic004G311100 Sobic004G311100 Sobic001G221300--Sobic004G311100 Sobic010G011800--Sobic010G022100 Sobic010G011800--Sobic002G288300 Sobic010G011800--Sobic009G091800 Sobic010G000500 Sobic010G000500 Sobic010G011800--Sobic010G000500 Sobic010G011800--Sobic002G198600 Sobic002G030200 Sobic002G030200 Sobic010G011800--Sobic002G030200 Sobic010G011800--Sobic004G238500 Sobic004G234200 Sobic004G234200 Sobic010G011800--Sobic004G234200 Sobic001G177000 Sobic001G177000 Sobic010G011800--Sobic001G177000 Sobic009G091800--Sobic008G051000 Sobic009G091800--Sobic002G288300 Sobic009G091800--Sobic004G234200 Sobic002G297300 Sobic002G297300 Sobic009G091800--Sobic002G297300 Sobic009G091800--Sobic010G022100 Sobic006G264201 Sobic006G264201 Sobic009G091800--Sobic006G264201 Sobic009G091800--Sobic004G238500 Sobic009G091800--Sobic010G000500 Sobic007G116950 Sobic007G116950 Sobic009G091800--Sobic007G116950 Sobic008G051000--Sobic009G091800 Sobic008G051000--Sobic004G238500 Sobic008G051000--Sobic007G116950 Sobic001G203000 Sobic001G203000 Sobic008G051000--Sobic001G203000 Sobic003G132100 Sobic003G132100 Sobic008G051000--Sobic003G132100 Sobic008G051000--Sobic006G264201 Sobic009G091850 Sobic009G091850 Sobic008G051000--Sobic009G091850 Sobic008G051000--Sobic004G234200 Sobic008G051000--Sobic002G297300 Sobic004G238500--Sobic006G264201 Sobic004G238500--Sobic008G051000 Sobic004G238500--Sobic002G297300 Sobic002G329600 Sobic002G329600 Sobic004G238500--Sobic002G329600 Sobic004G238500--Sobic009G091800 Sobic004G238500--Sobic007G116950 Sobic004G238500--Sobic003G132100 Sobic001G382100 Sobic001G382100 Sobic004G238500--Sobic001G382100 Sobic007G029300 Sobic007G029300 Sobic004G238500--Sobic007G029300 Sobic010G022100--Sobic009G091800 Sobic010G022100--Sobic004G234200 Sobic010G022100--Sobic002G288300 Sobic010G022100--Sobic010G011800 Sobic010G022100--Sobic002G297300 Sobic010G022100--Sobic010G000500 Sobic010G022100--Sobic008G051000 Sobic002G414400 Sobic002G414400 Sobic010G022100--Sobic002G414400 Sobic010G022100--Sobic004G238500 Sobic003G433900--Sobic002G198600 Sobic003G433900--Sobic003G132100 Sobic003G433900--Sobic009G091850 Sobic009G130700 Sobic009G130700 Sobic003G433900--Sobic009G130700 Sobic003G433900--Sobic008G051000 Sobic003G433900--Sobic009G091800 Sobic003G433900--Sobic004G238500 Sobic003G433900--Sobic002G297300 Sobic002G033800 Sobic002G033800 Sobic003G433900--Sobic002G033800 Sobic003G069200--Sobic001G221300 Sobic003G120500 Sobic003G120500 Sobic003G069200--Sobic003G120500 Sobic004G036100 Sobic004G036100 Sobic003G069200--Sobic004G036100 Sobic006G155700 Sobic006G155700 Sobic003G069200--Sobic006G155700 Sobic003G069200--Sobic006G248200 Sobic003G069200--Sobic003G150600 Sobic003G069200--Sobic003G386300 Sobic003G157400 Sobic003G157400 Sobic003G069200--Sobic003G157400 Sobic001G475600 Sobic001G475600 Sobic003G069200--Sobic001G475600 Sobic002G288300--Sobic009G091800 Sobic002G288300--Sobic010G022100 Sobic002G288300--Sobic010G000500 Sobic002G288300--Sobic004G234200 Sobic002G338000 Sobic002G338000 Sobic002G288300--Sobic002G338000 Sobic002G288300--Sobic002G414400 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic006G264900 Sobic006G264900 Sobic002G288300--Sobic006G264900
Octagon: transcription factors


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