Gene annotation
Transcriptome id Sobic.002G065200.1
Synonym CRR28, Sb02g005450
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q9K7
Pfam PF13041 PF01535 PF14432
Panther DB PTHR24015 PTHR24015:SF869
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G59720 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g09370.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a016040
Brachypodium KQK20489
Barley HORVU5Hr1G113990.21 , HORVU5Hr1G113990.4 , HORVU5Hr1G113840.1 , HORVU5Hr1G113840.2 , HORVU5Hr1G113990.10 , HORVU5Hr1G113990.11 , HORVU5Hr1G113990.12 , HORVU5Hr1G113990.13 , HORVU5Hr1G113990.14 , HORVU5Hr1G113990.15 , HORVU5Hr1G113990.16 , HORVU5Hr1G113990.17 , HORVU5Hr1G113990.18 , HORVU5Hr1G113990.19 , HORVU5Hr1G113990.5 , HORVU5Hr1G113990.25 , HORVU5Hr1G113990.24 , HORVU5Hr1G113990.27 , HORVU5Hr1G113990.26 , HORVU5Hr1G113990.20 , HORVU5Hr1G113990.23 , HORVU5Hr1G113990.22 , HORVU5Hr1G113990.29 , HORVU5Hr1G113990.28 , HORVU5Hr1G113990.38 , HORVU5Hr1G113990.39 , HORVU5Hr1G113990.32 , HORVU5Hr1G113990.33 , HORVU5Hr1G113990.30 , HORVU5Hr1G113990.31 , HORVU5Hr1G113990.36 , HORVU5Hr1G113990.37 , HORVU5Hr1G113990.34 , HORVU5Hr1G113990.35 , HORVU5Hr1G113990.48 , HORVU5Hr1G113990.47 , HORVU5Hr1G113990.46 , HORVU5Hr1G113990.45 , HORVU5Hr1G113990.44 , HORVU5Hr1G113990.42 , HORVU5Hr1G113990.41 , HORVU5Hr1G113990.40 , HORVU5Hr1G113990.2 , HORVU5Hr1G113990.3 , HORVU5Hr1G113990.1 , HORVU5Hr1G113990.6 , HORVU5Hr1G113990.7 , HORVU5Hr1G113990.8 , HORVU5Hr1G113990.9
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
2 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
3 Sobic.010G011800 OsFBO18 - F-box and other domain containing protein, expressed -
4 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
5 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
6 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
8 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
9 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
11 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
12 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
13 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
14 Sobic.003G433900 expressed protein -
15 Sobic.003G222500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
16 Sobic.006G256600 expressed protein -
17 Sobic.007G223500 expressed protein -
18 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
19 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
20 Sobic.001G447700 expressed protein -


Gene co-expression network
sample Sobic002G065200 Sobic002G065200 Sobic002G198600 Sobic002G198600 Sobic002G065200--Sobic002G198600 Sobic008G063500 Sobic008G063500 Sobic002G065200--Sobic008G063500 Sobic010G011800 Sobic010G011800 Sobic002G065200--Sobic010G011800 Sobic004G175500 Sobic004G175500 Sobic002G065200--Sobic004G175500 Sobic004G227200 Sobic004G227200 Sobic002G065200--Sobic004G227200 Sobic001G029100 Sobic001G029100 Sobic002G065200--Sobic001G029100 Sobic002G316700 Sobic002G316700 Sobic002G065200--Sobic002G316700 Sobic001G177000 Sobic001G177000 Sobic002G065200--Sobic001G177000 Sobic002G288300 Sobic002G288300 Sobic002G065200--Sobic002G288300 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic003G386300 Sobic003G386300 Sobic002G198600--Sobic003G386300 Sobic009G030900 Sobic009G030900 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic002G198600--Sobic010G011800 Sobic004G311100 Sobic004G311100 Sobic002G198600--Sobic004G311100 Sobic008G063500--Sobic001G177000 Sobic002G030200 Sobic002G030200 Sobic008G063500--Sobic002G030200 Sobic002G242000 Sobic002G242000 Sobic008G063500--Sobic002G242000 Sobic007G136900 Sobic007G136900 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic004G056900 Sobic004G056900 Sobic008G063500--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic008G063500--Sobic001G046900 Sobic008G063500--Sobic002G316700 Sobic002G338000 Sobic002G338000 Sobic008G063500--Sobic002G338000 Sobic010G022100 Sobic010G022100 Sobic010G011800--Sobic010G022100 Sobic010G011800--Sobic002G288300 Sobic010G011800--Sobic009G091800 Sobic010G000500 Sobic010G000500 Sobic010G011800--Sobic010G000500 Sobic010G011800--Sobic002G198600 Sobic010G011800--Sobic002G030200 Sobic004G238500 Sobic004G238500 Sobic010G011800--Sobic004G238500 Sobic004G234200 Sobic004G234200 Sobic010G011800--Sobic004G234200 Sobic010G011800--Sobic001G177000 Sobic003G387800 Sobic003G387800 Sobic004G175500--Sobic003G387800 Sobic004G343300 Sobic004G343300 Sobic004G175500--Sobic004G343300 Sobic007G004800 Sobic007G004800 Sobic004G175500--Sobic007G004800 Sobic004G175500--Sobic002G198600 Sobic004G249800 Sobic004G249800 Sobic004G175500--Sobic004G249800 Sobic007G071500 Sobic007G071500 Sobic004G175500--Sobic007G071500 Sobic004G175500--Sobic001G029100 Sobic006G103400 Sobic006G103400 Sobic004G175500--Sobic006G103400 Sobic004G175500--Sobic009G030900 Sobic007G223500 Sobic007G223500 Sobic004G227200--Sobic007G223500 Sobic006G093900 Sobic006G093900 Sobic004G227200--Sobic006G093900 Sobic004G227200--Sobic002G316700 Sobic001G035800 Sobic001G035800 Sobic004G227200--Sobic001G035800 Sobic009G143100 Sobic009G143100 Sobic004G227200--Sobic009G143100 Sobic001G168800 Sobic001G168800 Sobic004G227200--Sobic001G168800 Sobic004G227200--Sobic004G175500 Sobic004G227200--Sobic003G387800 Sobic002G030500 Sobic002G030500 Sobic004G227200--Sobic002G030500 Sobic001G029100--Sobic004G175500 Sobic001G029100--Sobic009G030900 Sobic001G029100--Sobic009G143100 Sobic001G029100--Sobic003G387800 Sobic002G033800 Sobic002G033800 Sobic001G029100--Sobic002G033800 Sobic001G029100--Sobic007G004800 Sobic001G029100--Sobic002G198600 Sobic001G029100--Sobic006G093900 Sobic001G029100--Sobic007G071500 Sobic002G316700--Sobic007G223500 Sobic002G316700--Sobic009G143100 Sobic002G316700--Sobic007G071500 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic002G316700--Sobic008G063500 Sobic008G134800 Sobic008G134800 Sobic002G316700--Sobic008G134800 Sobic002G316700--Sobic001G177000 Sobic002G316700--Sobic004G056900 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic010G241000 Sobic010G241000 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000 Sobic002G288300--Sobic009G091800 Sobic002G288300--Sobic010G022100 Sobic002G288300--Sobic010G000500 Sobic002G288300--Sobic004G234200 Sobic002G288300--Sobic002G338000 Sobic002G414400 Sobic002G414400 Sobic002G288300--Sobic002G414400 Sobic002G288300--Sobic010G011800 Sobic004G193400 Sobic004G193400 Sobic002G288300--Sobic004G193400 Sobic006G264900 Sobic006G264900 Sobic002G288300--Sobic006G264900
Octagon: transcription factors


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