Gene annotation
Transcriptome id Sobic.002G316700.1
Synonym ATPC1, Sb02g034570
Functional annotation ATP synthase subunit gamma (PubMedID : 26186930)
ATP synthase subunit gamma (Zm) (PubMedID : 27208977)
ATP synthase gamma chain, putative, expressed
UniProt A0A1B6QEH8
Pfam PF00231
Panther DB PTHR11693 PTHR11693:SF21
NCBI CDD KOG1531; F0F1-type ATP synthase, gamma subunit
KEGG Orthology K02115; ATPF1G, F-type H+-transporting ATPase subunit gamma
Gene Ontology GO:0015986; ATP synthesis coupled proton transport


Orthologs (automatic annotation)
TAIR AT4G04640 : ATPase, F1 complex, gamma subunit protein
RAP-DB (Rice) LOC_Os07g32880.1 : ATP synthase gamma chain, putative, expressed
MaizeGDB (Corn) Zm00025a048210 , Zm00025a014767
Brachypodium KQK16024
Barley HORVU2Hr1G046740.14 , HORVU2Hr1G046740.13 , HORVU2Hr1G046740.21
Wheat -
Populus -


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cDNA sequences
Sobic.002G316700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G223500 expressed protein -
2 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
3 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
4 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
5 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
6 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
7 Sobic.008G134800 shikimate kinase, putative, expressed -
8 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
9 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1
10 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
12 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
13 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
14 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
15 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
16 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b
17 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
18 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
19 Sobic.009G164300 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
20 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI


Gene co-expression network
sample Sobic002G316700 Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic002G316700--Sobic007G223500 Sobic009G143100 Sobic009G143100 Sobic002G316700--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic008G134800 Sobic008G134800 Sobic002G316700--Sobic008G134800 Sobic001G177000 Sobic001G177000 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic001G425400 Sobic001G425400 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic003G387800 Sobic003G387800 Sobic007G223500--Sobic003G387800 Sobic008G066100 Sobic008G066100 Sobic007G223500--Sobic008G066100 Sobic009G143100--Sobic007G071500 Sobic009G143100--Sobic002G316700 Sobic009G143100--Sobic007G223500 Sobic009G143100--Sobic008G134800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic001G417200 Sobic001G417200 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic009G143100--Sobic004G249800 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic004G343300 Sobic004G343300 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic004G035500 Sobic004G035500 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic007G071500--Sobic001G177000 Sobic003G209900--Sobic008G063500 Sobic003G209900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic003G209900--Sobic007G136900 Sobic003G209900--Sobic001G177000 Sobic003G209900--Sobic002G316700 Sobic002G242000 Sobic002G242000 Sobic003G209900--Sobic002G242000 Sobic001G070500 Sobic001G070500 Sobic003G209900--Sobic001G070500 Sobic001G046900 Sobic001G046900 Sobic003G209900--Sobic001G046900 Sobic003G209900--Sobic003G052500 Sobic007G207800--Sobic008G134800 Sobic007G207800--Sobic007G223500 Sobic002G030500 Sobic002G030500 Sobic007G207800--Sobic002G030500 Sobic007G207800--Sobic008G066100 Sobic007G207800--Sobic001G425400 Sobic003G359100 Sobic003G359100 Sobic007G207800--Sobic003G359100 Sobic001G519800 Sobic001G519800 Sobic007G207800--Sobic001G519800 Sobic007G207800--Sobic002G316700 Sobic007G207800--Sobic007G071500 Sobic008G063500--Sobic001G177000 Sobic002G030200 Sobic002G030200 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic008G063500--Sobic007G136900 Sobic008G063500--Sobic003G209900 Sobic008G063500--Sobic004G056900 Sobic008G063500--Sobic001G046900 Sobic008G063500--Sobic002G316700 Sobic002G338000 Sobic002G338000 Sobic008G063500--Sobic002G338000 Sobic008G134800--Sobic003G359100 Sobic008G134800--Sobic007G207800 Sobic008G134800--Sobic007G071500 Sobic008G134800--Sobic007G223500 Sobic008G134800--Sobic001G425400 Sobic008G134800--Sobic004G035500 Sobic008G134800--Sobic008G066100 Sobic008G134800--Sobic009G143100 Sobic008G134800--Sobic004G249800 Sobic001G177000--Sobic004G056900 Sobic001G177000--Sobic002G242000 Sobic001G177000--Sobic001G046900 Sobic010G241000 Sobic010G241000 Sobic001G177000--Sobic010G241000 Sobic001G177000--Sobic002G030200 Sobic001G177000--Sobic008G063500 Sobic009G234600 Sobic009G234600 Sobic001G177000--Sobic009G234600 Sobic001G177000--Sobic007G136900 Sobic001G177000--Sobic002G338000 Sobic004G056900--Sobic002G242000 Sobic004G056900--Sobic001G177000 Sobic004G056900--Sobic001G046900 Sobic004G056900--Sobic001G070500 Sobic002G033900 Sobic002G033900 Sobic004G056900--Sobic002G033900 Sobic004G056900--Sobic007G136900 Sobic006G073500 Sobic006G073500 Sobic004G056900--Sobic006G073500 Sobic004G056900--Sobic010G241000 Sobic004G056900--Sobic003G052500
Octagon: transcription factors


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