Gene annotation
Transcriptome id Sobic.001G417200.1
Synonym Sb01g039270
Functional annotation ATP synthase B chain, chloroplast precursor, putative, expressed
UniProt C5WPC6
Pfam PF00430
Panther DB -
NCBI CDD -
KEGG Orthology K02109; ATPF0B, F-type H+-transporting ATPase subunit b
Gene Ontology GO:0015986; ATP synthesis coupled proton transport GO:0015078proton transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT4G32260 : ATPase, F0 complex, subunit B/B\', bacterial/chloroplast
RAP-DB (Rice) LOC_Os03g17070.1 : ATP synthase B chain, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a052737
Brachypodium KQK01505
Barley HORVU4Hr1G058970.11 , HORVU4Hr1G058970.9 , HORVU4Hr1G058970.8 , HORVU4Hr1G058970.3 , HORVU4Hr1G058970.2 , HORVU4Hr1G058970.1 , HORVU4Hr1G058970.10 , HORVU4Hr1G058970.7 , HORVU4Hr1G058970.6 , HORVU4Hr1G058970.5 , HORVU4Hr1G058970.4
Wheat -
Populus -


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cDNA sequences
Sobic.001G417200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
2 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
3 Sobic.002G316700 ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma
4 Sobic.007G223500 expressed protein -
5 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
6 Sobic.001G035800 heavy metal-associated domain containing protein, expressed -
7 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
8 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
10 Sobic.002G227700 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.008G134800 shikimate kinase, putative, expressed -
12 Sobic.002G033800 expressed protein -
13 Sobic.004G227200 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
14 Sobic.005G194100 expressed protein -
15 Sobic.003G230400 50S ribosomal protein L31, putative, expressed K02909: RP-L31, large subunit ribosomal protein L31
16 Sobic.003G433900 expressed protein -
17 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
19 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
20 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase


Gene co-expression network
sample Sobic001G417200 Sobic001G417200 Sobic009G143100 Sobic009G143100 Sobic001G417200--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic001G417200--Sobic007G071500 Sobic002G316700 Sobic002G316700 Sobic001G417200--Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic001G417200--Sobic007G223500 Sobic006G093900 Sobic006G093900 Sobic001G417200--Sobic006G093900 Sobic001G035800 Sobic001G035800 Sobic001G417200--Sobic001G035800 Sobic003G387800 Sobic003G387800 Sobic001G417200--Sobic003G387800 Sobic001G029100 Sobic001G029100 Sobic001G417200--Sobic001G029100 Sobic007G004800 Sobic007G004800 Sobic001G417200--Sobic007G004800 Sobic009G143100--Sobic007G071500 Sobic009G143100--Sobic002G316700 Sobic009G143100--Sobic007G223500 Sobic008G134800 Sobic008G134800 Sobic009G143100--Sobic008G134800 Sobic009G143100--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G143100--Sobic009G140600 Sobic009G143100--Sobic001G417200 Sobic006G105900 Sobic006G105900 Sobic009G143100--Sobic006G105900 Sobic004G249800 Sobic004G249800 Sobic009G143100--Sobic004G249800 Sobic007G071500--Sobic009G143100 Sobic007G071500--Sobic006G105900 Sobic007G071500--Sobic004G249800 Sobic004G343300 Sobic004G343300 Sobic007G071500--Sobic004G343300 Sobic007G071500--Sobic002G316700 Sobic007G071500--Sobic008G134800 Sobic004G035500 Sobic004G035500 Sobic007G071500--Sobic004G035500 Sobic003G052500 Sobic003G052500 Sobic007G071500--Sobic003G052500 Sobic001G177000 Sobic001G177000 Sobic007G071500--Sobic001G177000 Sobic002G316700--Sobic007G223500 Sobic002G316700--Sobic009G143100 Sobic002G316700--Sobic007G071500 Sobic003G209900 Sobic003G209900 Sobic002G316700--Sobic003G209900 Sobic007G207800 Sobic007G207800 Sobic002G316700--Sobic007G207800 Sobic008G063500 Sobic008G063500 Sobic002G316700--Sobic008G063500 Sobic002G316700--Sobic008G134800 Sobic002G316700--Sobic001G177000 Sobic004G056900 Sobic004G056900 Sobic002G316700--Sobic004G056900 Sobic007G223500--Sobic002G316700 Sobic007G223500--Sobic007G207800 Sobic004G227200 Sobic004G227200 Sobic007G223500--Sobic004G227200 Sobic007G223500--Sobic008G134800 Sobic007G223500--Sobic009G143100 Sobic001G425400 Sobic001G425400 Sobic007G223500--Sobic001G425400 Sobic007G223500--Sobic007G071500 Sobic007G223500--Sobic003G387800 Sobic008G066100 Sobic008G066100 Sobic007G223500--Sobic008G066100 Sobic006G093900--Sobic007G004800 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic006G093900--Sobic004G227200 Sobic001G519800 Sobic001G519800 Sobic006G093900--Sobic001G519800 Sobic009G043000 Sobic009G043000 Sobic006G093900--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic006G093900--Sobic001G102800 Sobic008G102000 Sobic008G102000 Sobic006G093900--Sobic008G102000 Sobic003G002300 Sobic003G002300 Sobic006G093900--Sobic003G002300 Sobic009G055800 Sobic009G055800 Sobic001G035800--Sobic009G055800 Sobic001G035800--Sobic001G417200 Sobic001G035800--Sobic004G227200 Sobic001G405700 Sobic001G405700 Sobic001G035800--Sobic001G405700 Sobic001G035800--Sobic006G093900 Sobic003G254600 Sobic003G254600 Sobic001G035800--Sobic003G254600 Sobic001G035800--Sobic003G412900 Sobic003G439000 Sobic003G439000 Sobic001G035800--Sobic003G439000 Sobic001G168800 Sobic001G168800 Sobic001G035800--Sobic001G168800 Sobic004G175500 Sobic004G175500 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic010G005500 Sobic010G005500 Sobic003G387800--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic003G387800--Sobic009G030900 Sobic007G052400 Sobic007G052400 Sobic003G387800--Sobic007G052400 Sobic003G387800--Sobic009G143100 Sobic003G387800--Sobic008G134800 Sobic001G029100--Sobic004G175500 Sobic001G029100--Sobic009G030900 Sobic001G029100--Sobic009G143100 Sobic001G029100--Sobic003G387800 Sobic002G033800 Sobic002G033800 Sobic001G029100--Sobic002G033800 Sobic001G029100--Sobic007G004800 Sobic002G198600 Sobic002G198600 Sobic001G029100--Sobic002G198600 Sobic001G029100--Sobic006G093900 Sobic001G029100--Sobic007G071500 Sobic007G004800--Sobic003G387800 Sobic007G004800--Sobic001G519800 Sobic008G021300 Sobic008G021300 Sobic007G004800--Sobic008G021300 Sobic007G004800--Sobic004G175500 Sobic007G004800--Sobic003G002300 Sobic002G051100 Sobic002G051100 Sobic007G004800--Sobic002G051100 Sobic004G272100 Sobic004G272100 Sobic007G004800--Sobic004G272100 Sobic007G004800--Sobic007G052400 Sobic007G004800--Sobic006G093900
Octagon: transcription factors


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