Gene annotation
Transcriptome id Sobic.003G230400.1
Synonym Sb03g028840, emb2184
Functional annotation 50S ribosomal protein L31, putative, expressed
UniProt C5XEG8
Pfam PF01197
Panther DB PTHR33280 PTHR33280:SF1
NCBI CDD -
KEGG Orthology K02909; RP-L31, large subunit ribosomal protein L31
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G75350 : Ribosomal protein L31
RAP-DB (Rice) LOC_Os01g44210.1 : 50S ribosomal protein L31, putative, expressed
MaizeGDB (Corn) Zm00025a028316
Brachypodium KQJ89963 , KQK08876
Barley HORVU3Hr1G056580.3 , HORVU3Hr1G056580.2 , HORVU3Hr1G056580.1 , HORVU3Hr1G056580.5 , HORVU3Hr1G056580.4
Wheat TraesCS3B02G257700 , TraesCS3D02G224800 , TraesCS3A02G226800
Populus -


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cDNA sequences
Sobic.003G230400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G043000 thioredoxin, putative, expressed -
2 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b
3 Sobic.007G052400 rubredoxin family protein, putative, expressed -
4 Sobic.010G042400 -(PubMedID : 26465154)@expressed protein -
5 Sobic.006G067400 Ser/Thr protein phosphatase family protein, putative, expressed -
6 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
7 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
8 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
9 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
10 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
11 Sobic.001G405700 - -
12 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
13 Sobic.001G102800 expressed protein -
14 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
15 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
16 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
17 Sobic.003G412900 NAD(P)H dehydrogenase 18(PubMedID : 26465154)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
18 Sobic.010G201700 GA16396-PA, putative, expressed -
19 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
20 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase


Gene co-expression network
sample Sobic003G230400 Sobic003G230400 Sobic009G043000 Sobic009G043000 Sobic003G230400--Sobic009G043000 Sobic001G417200 Sobic001G417200 Sobic003G230400--Sobic001G417200 Sobic007G052400 Sobic007G052400 Sobic003G230400--Sobic007G052400 Sobic010G042400 Sobic010G042400 Sobic003G230400--Sobic010G042400 Sobic006G067400 Sobic006G067400 Sobic003G230400--Sobic006G067400 Sobic008G171300 Sobic008G171300 Sobic003G230400--Sobic008G171300 Sobic003G002300 Sobic003G002300 Sobic003G230400--Sobic003G002300 Sobic006G093900 Sobic006G093900 Sobic003G230400--Sobic006G093900 Sobic001G519800 Sobic001G519800 Sobic003G230400--Sobic001G519800 Sobic010G201700 Sobic010G201700 Sobic009G043000--Sobic010G201700 Sobic009G043000--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic009G043000--Sobic008G102000 Sobic001G102800 Sobic001G102800 Sobic009G043000--Sobic001G102800 Sobic007G225500 Sobic007G225500 Sobic009G043000--Sobic007G225500 Sobic004G272100 Sobic004G272100 Sobic009G043000--Sobic004G272100 Sobic006G207800 Sobic006G207800 Sobic009G043000--Sobic006G207800 Sobic009G140600 Sobic009G140600 Sobic009G043000--Sobic009G140600 Sobic009G043000--Sobic001G519800 Sobic009G143100 Sobic009G143100 Sobic001G417200--Sobic009G143100 Sobic007G071500 Sobic007G071500 Sobic001G417200--Sobic007G071500 Sobic002G316700 Sobic002G316700 Sobic001G417200--Sobic002G316700 Sobic007G223500 Sobic007G223500 Sobic001G417200--Sobic007G223500 Sobic001G417200--Sobic006G093900 Sobic001G035800 Sobic001G035800 Sobic001G417200--Sobic001G035800 Sobic003G387800 Sobic003G387800 Sobic001G417200--Sobic003G387800 Sobic001G029100 Sobic001G029100 Sobic001G417200--Sobic001G029100 Sobic007G004800 Sobic007G004800 Sobic001G417200--Sobic007G004800 Sobic010G005500 Sobic010G005500 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic004G012900 Sobic004G012900 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G052400--Sobic007G225500 Sobic009G183700 Sobic009G183700 Sobic007G052400--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic007G052400--Sobic009G030900 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic010G042400--Sobic003G230400 Sobic006G238200 Sobic006G238200 Sobic010G042400--Sobic006G238200 Sobic003G419900 Sobic003G419900 Sobic010G042400--Sobic003G419900 Sobic003G398800 Sobic003G398800 Sobic010G042400--Sobic003G398800 Sobic002G370600 Sobic002G370600 Sobic010G042400--Sobic002G370600 Sobic003G408000 Sobic003G408000 Sobic010G042400--Sobic003G408000 Sobic003G431700 Sobic003G431700 Sobic010G042400--Sobic003G431700 Sobic004G308700 Sobic004G308700 Sobic010G042400--Sobic004G308700 Sobic003G367500 Sobic003G367500 Sobic010G042400--Sobic003G367500 Sobic008G188600 Sobic008G188600 Sobic006G067400--Sobic008G188600 Sobic006G067400--Sobic008G171300 Sobic009G059300 Sobic009G059300 Sobic006G067400--Sobic009G059300 Sobic006G067400--Sobic009G043000 Sobic001G314200 Sobic001G314200 Sobic006G067400--Sobic001G314200 Sobic006G067400--Sobic007G052400 Sobic009G210200 Sobic009G210200 Sobic006G067400--Sobic009G210200 Sobic006G067400--Sobic009G030900 Sobic006G067400--Sobic007G225500 Sobic008G171300--Sobic002G233700 Sobic008G171300--Sobic007G052400 Sobic008G171300--Sobic007G225500 Sobic008G171300--Sobic003G002300 Sobic008G171300--Sobic008G102000 Sobic008G171300--Sobic009G059300 Sobic008G171300--Sobic004G012900 Sobic008G171300--Sobic009G140600 Sobic008G171300--Sobic009G183700 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic003G002300--Sobic009G043000 Sobic003G002300--Sobic008G102000 Sobic002G051100 Sobic002G051100 Sobic003G002300--Sobic002G051100 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic003G002300--Sobic010G005500 Sobic006G093900--Sobic007G004800 Sobic006G093900--Sobic009G140600 Sobic003G412900 Sobic003G412900 Sobic006G093900--Sobic003G412900 Sobic004G227200 Sobic004G227200 Sobic006G093900--Sobic004G227200 Sobic006G093900--Sobic001G519800 Sobic006G093900--Sobic009G043000 Sobic006G093900--Sobic001G102800 Sobic006G093900--Sobic008G102000 Sobic006G093900--Sobic003G002300 Sobic001G519800--Sobic004G272100 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic001G519800--Sobic004G308700 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200
Octagon: transcription factors


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