Gene annotation
Transcriptome id Sobic.003G408000.2
Synonym Sb03g044280, RPL27
Functional annotation ribosomal protein L27, putative, expressed
UniProt A0A1W0W196
Pfam PF01016
Panther DB PTHR15893
NCBI CDD KOG4600; Mitochondrial ribosomal protein MRP7 (L2)
KEGG Orthology K02899; RP-L27, MRPL27, large subunit ribosomal protein L27
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G40950 : ribosomal protein large subunit 27
RAP-DB (Rice) LOC_Os01g69950.1 : ribosomal protein L27, putative, expressed
MaizeGDB (Corn) Zm00025a039273
Brachypodium KQK11284
Barley HORVU3Hr1G095330.1 , HORVU3Hr1G095330.3 , HORVU3Hr1G095330.2 , HORVU6Hr1G041060.7 , HORVU6Hr1G041060.11 , HORVU6Hr1G041060.12
Wheat TraesCS3A02G435700 , TraesCS3D02G428300 , TraesCS3B02G470400
Populus -


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cDNA sequences
Sobic.003G408000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G405700 - -
2 Sobic.004G012900 expressed protein -
3 Sobic.003G419900 photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed K08903: photosystem II 13kDa protein
4 Sobic.009G131800 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
5 Sobic.008G039600 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
6 Sobic.003G077400 peptidase M50 family protein, putative, expressed -
7 Sobic.002G405100 elongation factor TS family protein, expressed K02357: tsf, elongation factor Ts
8 Sobic.009G055800 expressed protein -
9 Sobic.002G401800 bifunctional thioredoxin reductase/thioredoxin, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
10 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
11 Sobic.001G005200 expressed protein -
12 Sobic.007G052400 rubredoxin family protein, putative, expressed -
13 Sobic.001G175700 expressed protein -
14 Sobic.001G122300 PAP fibrillin family domain containing protein, expressed -
15 Sobic.001G469900 esterase/lipase/thioesterase, putative, expressed -
16 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
17 Sobic.001G035800 heavy metal-associated domain containing protein, expressed -
18 Sobic.003G230400 50S ribosomal protein L31, putative, expressed K02909: RP-L31, large subunit ribosomal protein L31
19 Sobic.007G162600 uncharacterized protein all1601, putative, expressed K18010: 7-hydroxymethyl chlorophyll a reductase
20 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase


Gene co-expression network
sample Sobic003G408000 Sobic003G408000 Sobic001G405700 Sobic001G405700 Sobic003G408000--Sobic001G405700 Sobic004G012900 Sobic004G012900 Sobic003G408000--Sobic004G012900 Sobic003G419900 Sobic003G419900 Sobic003G408000--Sobic003G419900 Sobic009G131800 Sobic009G131800 Sobic003G408000--Sobic009G131800 Sobic008G039600 Sobic008G039600 Sobic003G408000--Sobic008G039600 Sobic003G077400 Sobic003G077400 Sobic003G408000--Sobic003G077400 Sobic002G405100 Sobic002G405100 Sobic003G408000--Sobic002G405100 Sobic009G055800 Sobic009G055800 Sobic003G408000--Sobic009G055800 Sobic002G401800 Sobic002G401800 Sobic003G408000--Sobic002G401800 Sobic005G194100 Sobic005G194100 Sobic001G405700--Sobic005G194100 Sobic007G052400 Sobic007G052400 Sobic001G405700--Sobic007G052400 Sobic010G005500 Sobic010G005500 Sobic001G405700--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic001G405700--Sobic009G030900 Sobic001G175700 Sobic001G175700 Sobic001G405700--Sobic001G175700 Sobic001G405700--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic001G405700--Sobic008G171300 Sobic004G239100 Sobic004G239100 Sobic001G405700--Sobic004G239100 Sobic002G227700 Sobic002G227700 Sobic001G405700--Sobic002G227700 Sobic004G012900--Sobic007G052400 Sobic002G233700 Sobic002G233700 Sobic004G012900--Sobic002G233700 Sobic004G012900--Sobic002G401800 Sobic004G012900--Sobic010G005500 Sobic003G378600 Sobic003G378600 Sobic004G012900--Sobic003G378600 Sobic009G059300 Sobic009G059300 Sobic004G012900--Sobic009G059300 Sobic010G277600 Sobic010G277600 Sobic004G012900--Sobic010G277600 Sobic003G387100 Sobic003G387100 Sobic004G012900--Sobic003G387100 Sobic004G012900--Sobic008G171300 Sobic007G181400 Sobic007G181400 Sobic003G419900--Sobic007G181400 Sobic004G353100 Sobic004G353100 Sobic003G419900--Sobic004G353100 Sobic004G359600 Sobic004G359600 Sobic003G419900--Sobic004G359600 Sobic004G202200 Sobic004G202200 Sobic003G419900--Sobic004G202200 Sobic003G419900--Sobic002G233700 Sobic006G140500 Sobic006G140500 Sobic003G419900--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic003G419900--Sobic004G028300 Sobic001G289500 Sobic001G289500 Sobic003G419900--Sobic001G289500 Sobic001G015200 Sobic001G015200 Sobic003G419900--Sobic001G015200 Sobic009G131800--Sobic001G175700 Sobic004G055000 Sobic004G055000 Sobic009G131800--Sobic004G055000 Sobic002G272100 Sobic002G272100 Sobic009G131800--Sobic002G272100 Sobic004G020300 Sobic004G020300 Sobic009G131800--Sobic004G020300 Sobic004G343000 Sobic004G343000 Sobic009G131800--Sobic004G343000 Sobic009G131800--Sobic001G405700 Sobic008G172700 Sobic008G172700 Sobic009G131800--Sobic008G172700 Sobic009G131800--Sobic003G408000 Sobic002G267900 Sobic002G267900 Sobic009G131800--Sobic002G267900 Sobic005G143500 Sobic005G143500 Sobic008G039600--Sobic005G143500 Sobic001G083100 Sobic001G083100 Sobic008G039600--Sobic001G083100 Sobic006G106400 Sobic006G106400 Sobic008G039600--Sobic006G106400 Sobic008G039600--Sobic002G401800 Sobic008G039600--Sobic002G272100 Sobic010G002000 Sobic010G002000 Sobic008G039600--Sobic010G002000 Sobic001G368500 Sobic001G368500 Sobic008G039600--Sobic001G368500 Sobic003G094350 Sobic003G094350 Sobic008G039600--Sobic003G094350 Sobic002G181000 Sobic002G181000 Sobic008G039600--Sobic002G181000 Sobic001G469933 Sobic001G469933 Sobic003G077400--Sobic001G469933 Sobic008G073100 Sobic008G073100 Sobic003G077400--Sobic008G073100 Sobic005G110400 Sobic005G110400 Sobic003G077400--Sobic005G110400 Sobic003G077400--Sobic004G012900 Sobic003G077400--Sobic001G368500 Sobic003G077400--Sobic002G401800 Sobic003G077400--Sobic003G387100 Sobic003G160800 Sobic003G160800 Sobic003G077400--Sobic003G160800 Sobic004G336200 Sobic004G336200 Sobic003G077400--Sobic004G336200 Sobic002G133900 Sobic002G133900 Sobic002G405100--Sobic002G133900 Sobic005G100300 Sobic005G100300 Sobic002G405100--Sobic005G100300 Sobic002G405100--Sobic002G401800 Sobic002G405100--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic002G405100--Sobic010G035400 Sobic010G201600 Sobic010G201600 Sobic002G405100--Sobic010G201600 Sobic002G405100--Sobic003G094350 Sobic002G405100--Sobic004G336200 Sobic002G405100--Sobic007G052400 Sobic001G469900 Sobic001G469900 Sobic009G055800--Sobic001G469900 Sobic001G035800 Sobic001G035800 Sobic009G055800--Sobic001G035800 Sobic009G055800--Sobic003G077400 Sobic009G164300 Sobic009G164300 Sobic009G055800--Sobic009G164300 Sobic003G439000 Sobic003G439000 Sobic009G055800--Sobic003G439000 Sobic003G254600 Sobic003G254600 Sobic009G055800--Sobic003G254600 Sobic008G062500 Sobic008G062500 Sobic009G055800--Sobic008G062500 Sobic001G168800 Sobic001G168800 Sobic009G055800--Sobic001G168800 Sobic009G055800--Sobic001G469933 Sobic002G401800--Sobic004G336200 Sobic002G401800--Sobic008G073100 Sobic002G401800--Sobic002G405100 Sobic002G401800--Sobic004G012900 Sobic002G401800--Sobic002G272100 Sobic002G401800--Sobic005G110400 Sobic002G401800--Sobic005G100300 Sobic002G401800--Sobic001G368500 Sobic002G401800--Sobic003G077400
Octagon: transcription factors


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