Gene annotation
Transcriptome id Sobic.001G405700.1
Synonym Sb01g038375
Functional annotation -
UniProt A0A1B6QNU3
Pfam -
Panther DB PTHR37233 PTHR37233:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56010 : -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a002001
Brachypodium KQK22150
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G405700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G194100 expressed protein -
2 Sobic.007G052400 rubredoxin family protein, putative, expressed -
3 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
4 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
5 Sobic.001G175700 expressed protein -
6 Sobic.004G012900 expressed protein -
7 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
8 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -
9 Sobic.002G227700 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.010G277600 - -
11 Sobic.002G272100 expressed protein -
12 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
13 Sobic.008G172700 OsDegp15 - Putative Deg protease homologue, expressed -
14 Sobic.003G408000 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27
15 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.001G035800 heavy metal-associated domain containing protein, expressed -
17 Sobic.003G378600 "oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor"(PubMedID : 26465154)@NADH dehydrogenase I subunit N, putative, expressed -
18 Sobic.009G131800 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
19 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
20 Sobic.010G160700 PEPC(PubMedID : 19549309)@"C4 PTPC , photosynthetic C4 gene"(PubMedID : 2308851)@phosphoenolpyruvate carboxylase 2(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase


Gene co-expression network
sample Sobic001G405700 Sobic001G405700 Sobic005G194100 Sobic005G194100 Sobic001G405700--Sobic005G194100 Sobic007G052400 Sobic007G052400 Sobic001G405700--Sobic007G052400 Sobic010G005500 Sobic010G005500 Sobic001G405700--Sobic010G005500 Sobic009G030900 Sobic009G030900 Sobic001G405700--Sobic009G030900 Sobic001G175700 Sobic001G175700 Sobic001G405700--Sobic001G175700 Sobic004G012900 Sobic004G012900 Sobic001G405700--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic001G405700--Sobic008G171300 Sobic004G239100 Sobic004G239100 Sobic001G405700--Sobic004G239100 Sobic002G227700 Sobic002G227700 Sobic001G405700--Sobic002G227700 Sobic009G140600 Sobic009G140600 Sobic005G194100--Sobic009G140600 Sobic008G102000 Sobic008G102000 Sobic005G194100--Sobic008G102000 Sobic009G183700 Sobic009G183700 Sobic005G194100--Sobic009G183700 Sobic010G160700 Sobic010G160700 Sobic005G194100--Sobic010G160700 Sobic005G194100--Sobic004G239100 Sobic005G194100--Sobic008G171300 Sobic001G489000 Sobic001G489000 Sobic005G194100--Sobic001G489000 Sobic003G387800 Sobic003G387800 Sobic005G194100--Sobic003G387800 Sobic005G194100--Sobic009G030900 Sobic007G052400--Sobic010G005500 Sobic003G002300 Sobic003G002300 Sobic007G052400--Sobic003G002300 Sobic007G052400--Sobic004G012900 Sobic007G052400--Sobic008G171300 Sobic007G225500 Sobic007G225500 Sobic007G052400--Sobic007G225500 Sobic007G052400--Sobic009G183700 Sobic007G052400--Sobic009G030900 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic010G005500--Sobic009G183700 Sobic002G277100 Sobic002G277100 Sobic010G005500--Sobic002G277100 Sobic010G005500--Sobic003G387800 Sobic010G005500--Sobic004G012900 Sobic010G277600 Sobic010G277600 Sobic010G005500--Sobic010G277600 Sobic009G059300 Sobic009G059300 Sobic010G005500--Sobic009G059300 Sobic009G030900--Sobic010G005500 Sobic009G030900--Sobic010G277600 Sobic009G030900--Sobic007G052400 Sobic009G030900--Sobic009G183700 Sobic009G030900--Sobic003G387800 Sobic009G030900--Sobic009G059300 Sobic009G030900--Sobic003G002300 Sobic009G030900--Sobic008G171300 Sobic004G175500 Sobic004G175500 Sobic009G030900--Sobic004G175500 Sobic006G050400 Sobic006G050400 Sobic001G175700--Sobic006G050400 Sobic009G131800 Sobic009G131800 Sobic001G175700--Sobic009G131800 Sobic001G175700--Sobic004G012900 Sobic001G175700--Sobic001G405700 Sobic001G175700--Sobic002G233700 Sobic003G342200 Sobic003G342200 Sobic001G175700--Sobic003G342200 Sobic001G083100 Sobic001G083100 Sobic001G175700--Sobic001G083100 Sobic004G253400 Sobic004G253400 Sobic001G175700--Sobic004G253400 Sobic006G155500 Sobic006G155500 Sobic001G175700--Sobic006G155500 Sobic004G012900--Sobic007G052400 Sobic004G012900--Sobic002G233700 Sobic002G401800 Sobic002G401800 Sobic004G012900--Sobic002G401800 Sobic004G012900--Sobic010G005500 Sobic003G378600 Sobic003G378600 Sobic004G012900--Sobic003G378600 Sobic004G012900--Sobic009G059300 Sobic004G012900--Sobic010G277600 Sobic003G387100 Sobic003G387100 Sobic004G012900--Sobic003G387100 Sobic004G012900--Sobic008G171300 Sobic008G171300--Sobic002G233700 Sobic008G171300--Sobic007G052400 Sobic008G171300--Sobic007G225500 Sobic008G171300--Sobic003G002300 Sobic008G171300--Sobic008G102000 Sobic008G171300--Sobic009G059300 Sobic008G171300--Sobic004G012900 Sobic008G171300--Sobic009G140600 Sobic008G171300--Sobic009G183700 Sobic004G239100--Sobic010G277600 Sobic004G239100--Sobic009G183700 Sobic008G172700 Sobic008G172700 Sobic004G239100--Sobic008G172700 Sobic004G239100--Sobic005G194100 Sobic004G239100--Sobic003G378600 Sobic004G239100--Sobic008G102000 Sobic004G239100--Sobic009G030900 Sobic004G239100--Sobic009G140600 Sobic002G198600 Sobic002G198600 Sobic004G239100--Sobic002G198600 Sobic002G227700--Sobic005G194100 Sobic002G227700--Sobic001G405700 Sobic002G227700--Sobic010G160700 Sobic002G227700--Sobic009G030900 Sobic001G417200 Sobic001G417200 Sobic002G227700--Sobic001G417200 Sobic003G433900 Sobic003G433900 Sobic002G227700--Sobic003G433900 Sobic003G022300 Sobic003G022300 Sobic002G227700--Sobic003G022300 Sobic002G227700--Sobic003G387800 Sobic004G227200 Sobic004G227200 Sobic002G227700--Sobic004G227200
Octagon: transcription factors


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