Gene annotation
Transcriptome id Sobic.010G160700.1
Synonym ATPPC2,phosphoenolpyruvate carboxylase 1 (SbPPC1), Sb10g021330, PPC2, PPC2 , CP46; ATPPC2, CP46;phosphoenolpyruvate carboxylase 1 (SbPPC1)
Functional annotation PEPC (PubMedID : 19549309)
"C4 PTPC , photosynthetic C4 gene" (PubMedID : 2308851)
phosphoenolpyruvate carboxylase 2 (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 26976818)
phosphoenolpyruvate carboxylase, putative, expressed
UniProt P15804 , C5Z451
Pfam PF00311
Panther DB PTHR30523 PTHR30523:SF5
NCBI CDD -
KEGG Orthology K01595; phosphoenolpyruvate carboxylase
Gene Ontology GO:0015977; carbon fixation GO:0008964phosphoenolpyruvate carboxylase activity GO:0006099tricarboxylic acid cycle


Orthologs (automatic annotation)
TAIR AT2G42600 : phosphoenolpyruvate carboxylase 2
RAP-DB (Rice) LOC_Os02g14770.3 : phosphoenolpyruvate carboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a019988 , Zm00025a006609 , Zm00025a056769 , Zm00025a034476 , Zm00025a050966
Brachypodium KQJ94205 , KQK03254 , KQK18155 , KQK18156
Barley HORVU3Hr1G029200.6 , HORVU3Hr1G029200.7 , HORVU3Hr1G029200.4 , HORVU3Hr1G029200.2 , HORVU3Hr1G029200.3 , HORVU3Hr1G029200.1 , HORVU3Hr1G029200.8 , HORVU3Hr1G029200.9 , HORVU6Hr1G048410.3 , HORVU6Hr1G048410.2 , HORVU6Hr1G048410.1 , HORVU6Hr1G048410.6 , HORVU6Hr1G048410.5 , HORVU6Hr1G048410.4 , HORVU6Hr1G048410.12 , HORVU6Hr1G048410.10 , HORVU6Hr1G048410.14 , HORVU6Hr1G048410.11 , HORVU7Hr1G080510.13 , HORVU7Hr1G080510.12 , HORVU7Hr1G080510.11 , HORVU7Hr1G080510.10 , HORVU7Hr1G080510.14 , HORVU7Hr1G080510.8 , HORVU7Hr1G080510.9 , HORVU7Hr1G080510.5 , HORVU7Hr1G080510.3 , HORVU7Hr1G080510.2 , HORVU7Hr1G080510.1 , HORVU7Hr1G080510.7 , HORVU7Hr1G080510.6 , HORVU7Hr1G080510.4
Wheat TraesCS6B02G223100 , TraesCS3B02G168000 , TraesCS7D02G333900 , TraesCS5D02G186200 , TraesCS6A02G195600 , TraesCS7A02G345400 , TraesCS3A02G134200 , TraesCS5B02G179800 , TraesCS6D02G183200 , TraesCS6D02G183200 , TraesCS6D02G183200 , TraesCS3D02G150500 , TraesCS5A02G181800 , TraesCS7B02G237900
Populus -


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cDNA sequences
Sobic.010G160700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G002300 Glucose-6-phosphate/phosphate translocator-related(PubMedID : 26465154)@-(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@DUF250 domain containing protein, putative, expressed K15283: solute carrier family 35, member E1
2 Sobic.007G052400 rubredoxin family protein, putative, expressed -
3 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
4 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
5 Sobic.010G005500 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
6 Sobic.009G140600 hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.005G194100 expressed protein -
8 Sobic.007G225500 expressed protein -
9 Sobic.002G051100 Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
10 Sobic.008G102000 Chaperone DnaJ-domain superfamily protein(PubMedID : 26465154)@heat shock protein DnaJ, putative, expressed -
11 Sobic.004G303200 cytochrome b561, putative, expressed K08360: cytochrome b-561
12 Sobic.007G004800 Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
13 Sobic.009G043000 thioredoxin, putative, expressed -
14 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
15 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
16 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
17 Sobic.001G102800 expressed protein -
18 Sobic.006G093900 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
19 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -
20 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -


Gene co-expression network
sample Sobic010G160700 Sobic010G160700 Sobic003G002300 Sobic003G002300 Sobic010G160700--Sobic003G002300 Sobic007G052400 Sobic007G052400 Sobic010G160700--Sobic007G052400 Sobic001G519800 Sobic001G519800 Sobic010G160700--Sobic001G519800 Sobic003G387800 Sobic003G387800 Sobic010G160700--Sobic003G387800 Sobic010G005500 Sobic010G005500 Sobic010G160700--Sobic010G005500 Sobic009G140600 Sobic009G140600 Sobic010G160700--Sobic009G140600 Sobic005G194100 Sobic005G194100 Sobic010G160700--Sobic005G194100 Sobic007G225500 Sobic007G225500 Sobic010G160700--Sobic007G225500 Sobic002G051100 Sobic002G051100 Sobic010G160700--Sobic002G051100 Sobic003G002300--Sobic007G052400 Sobic003G002300--Sobic007G225500 Sobic003G002300--Sobic009G140600 Sobic009G043000 Sobic009G043000 Sobic003G002300--Sobic009G043000 Sobic008G102000 Sobic008G102000 Sobic003G002300--Sobic008G102000 Sobic003G002300--Sobic002G051100 Sobic010G201700 Sobic010G201700 Sobic003G002300--Sobic010G201700 Sobic003G002300--Sobic001G519800 Sobic003G002300--Sobic010G005500 Sobic007G052400--Sobic010G005500 Sobic007G052400--Sobic003G002300 Sobic004G012900 Sobic004G012900 Sobic007G052400--Sobic004G012900 Sobic008G171300 Sobic008G171300 Sobic007G052400--Sobic008G171300 Sobic007G052400--Sobic007G225500 Sobic009G183700 Sobic009G183700 Sobic007G052400--Sobic009G183700 Sobic009G030900 Sobic009G030900 Sobic007G052400--Sobic009G030900 Sobic007G052400--Sobic008G102000 Sobic002G233700 Sobic002G233700 Sobic007G052400--Sobic002G233700 Sobic004G272100 Sobic004G272100 Sobic001G519800--Sobic004G272100 Sobic001G102800 Sobic001G102800 Sobic001G519800--Sobic001G102800 Sobic001G519800--Sobic003G002300 Sobic001G519800--Sobic002G051100 Sobic003G431700 Sobic003G431700 Sobic001G519800--Sobic003G431700 Sobic001G519800--Sobic010G201700 Sobic004G308700 Sobic004G308700 Sobic001G519800--Sobic004G308700 Sobic007G004800 Sobic007G004800 Sobic001G519800--Sobic007G004800 Sobic008G053200 Sobic008G053200 Sobic001G519800--Sobic008G053200 Sobic004G175500 Sobic004G175500 Sobic003G387800--Sobic004G175500 Sobic003G387800--Sobic007G004800 Sobic003G387800--Sobic003G002300 Sobic003G387800--Sobic009G140600 Sobic003G387800--Sobic010G005500 Sobic003G387800--Sobic009G030900 Sobic003G387800--Sobic007G052400 Sobic009G143100 Sobic009G143100 Sobic003G387800--Sobic009G143100 Sobic008G134800 Sobic008G134800 Sobic003G387800--Sobic008G134800 Sobic010G005500--Sobic007G052400 Sobic010G005500--Sobic003G002300 Sobic010G005500--Sobic009G030900 Sobic010G005500--Sobic009G183700 Sobic002G277100 Sobic002G277100 Sobic010G005500--Sobic002G277100 Sobic010G005500--Sobic003G387800 Sobic010G005500--Sobic004G012900 Sobic010G277600 Sobic010G277600 Sobic010G005500--Sobic010G277600 Sobic009G059300 Sobic009G059300 Sobic010G005500--Sobic009G059300 Sobic009G140600--Sobic003G002300 Sobic009G140600--Sobic008G102000 Sobic003G378600 Sobic003G378600 Sobic009G140600--Sobic003G378600 Sobic009G140600--Sobic003G387800 Sobic001G122300 Sobic001G122300 Sobic009G140600--Sobic001G122300 Sobic009G140600--Sobic005G194100 Sobic009G140600--Sobic007G052400 Sobic001G005200 Sobic001G005200 Sobic009G140600--Sobic001G005200 Sobic009G140600--Sobic009G043000 Sobic005G194100--Sobic009G140600 Sobic005G194100--Sobic008G102000 Sobic005G194100--Sobic009G183700 Sobic005G194100--Sobic010G160700 Sobic004G239100 Sobic004G239100 Sobic005G194100--Sobic004G239100 Sobic005G194100--Sobic008G171300 Sobic001G489000 Sobic001G489000 Sobic005G194100--Sobic001G489000 Sobic005G194100--Sobic003G387800 Sobic005G194100--Sobic009G030900 Sobic007G225500--Sobic003G002300 Sobic010G035400 Sobic010G035400 Sobic007G225500--Sobic010G035400 Sobic007G225500--Sobic008G102000 Sobic007G225500--Sobic007G052400 Sobic007G225500--Sobic008G171300 Sobic007G225500--Sobic009G043000 Sobic002G275300 Sobic002G275300 Sobic007G225500--Sobic002G275300 Sobic006G077400 Sobic006G077400 Sobic007G225500--Sobic006G077400 Sobic007G225500--Sobic010G201700 Sobic002G051100--Sobic003G002300 Sobic002G051100--Sobic001G519800 Sobic002G051100--Sobic004G272100 Sobic002G051100--Sobic008G102000 Sobic002G051100--Sobic001G489000 Sobic002G051100--Sobic009G140600 Sobic002G051100--Sobic010G201700 Sobic002G051100--Sobic003G387800 Sobic002G051100--Sobic007G004800
Octagon: transcription factors


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